Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10502g00013 ATGGAAGAAGAAAGAAGCGTGGCAGACAAGAAAGTGGCAAAGAACGAGGTGGTTCTACGAATTTCAGACTCAGAAGGAGCCATGAATGCAGAAATAAAAGATTCTGGAAGTTTTCCAGTAGCTGGAAGCAGCTCCCTTTCTCCTCAGCACAAGACCCAGATAAGTAAAAGGTTTAAAGATTCTGGTGGTGAAATCACAGAGCCTCTGAGAAACAAGGATCAAGTTTCCACAAAGTGGATGACAACTACAAAGAGGCTGATCGGTCAGTCGGAATTTTCGAAGCCAAAGTCCAGAATGGTGGATCCACCGTGTCCAAGATTTGCAAAATTTGTCGAAGAAAAGGTTCGAATGACAAGTTCATTTGCATGGAATTCTCGTAACAGGAATGTTTCCGAAGCAACTACAGACAATCCAAGAACCCCCTTGCTTGGGACTCCCGCTGAAGAAGAAGATGACGATGAAGAGGTGTACATGATTGCAAATTTTGAAGTGGCCAAGAGATCTGGTAGGAAGTGGAGAGTTTTTGAGTTGTTTGCATTTGCTTTCATCATGGGGTTTTTTATTGCAAGTTTGTCTCTTACTCCGTTGCAAAAAAGAGAGCTTTGGGGTTTGAAGATGTGGAAATGGTGTGTATTTATATTGGCTATCCTCTGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTATATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTGAGTTTGGTTCTTCTGACATGGGATATGCTTTTCAGCCCTGAAGTGGAGAAAACCAGTAAGGTTGGTAGGATTCTTGATTACATTGCTCTGACCCTTGCTTCTTGTCTTATTGGAGCAGCTTTGTGGTTAGCCAAAACATTGTTGATAAAGCTTCTAGCTTCAAGTTTTCAATCTACAAGATTCTTTGACAGGGTGCACGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGCCCTCCCTTGATGGAGATGGCTGAAAAGGTTGGTACAACTTCAAATACTGACCAACTTAGTTATAAGACCATGCTTAATAAGAAGGAAGGGGAGAAAGGACAGGTAATTGATGCAGAAAAGCTCAAGAAAATGACACAAAAGAAAGTTTCTCCTTTGACTATGAAAGGGTTGATTAATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATGCACAGGATGATGATGAGAATGAACAGAAAGATAATGAAATTAATAGCGGGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTTATGAACGTGGCCAAGCCAGGACACAAGTACATTGAGATAGATGACCTCTTGCGATTCATGAAAATTGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTGAAAGTCTACCTTGGACGCAAATCGCTCATACATTCACTAAATGATACCAACACAGCTGTCGATGACTTGAATATACTTGCTTCTGCTGTTGTGGTTATTGTGACCCTTATTGTGTGGCTTCTTTTAACGGGTGTCTTAACAACTGAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGGTTTCATGTTTGGCAACACTGCTAAAACTGTGTTTGAAGCTATTATATTTGTTTTTGTGGTGCACCCTTTTGATGTTGGTGATCGATGCGTCATTGATGGTGTTCAGATGATTGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCAGTTCTCTCAAACAAGCCAATCAGTAACTTCAACAGGAGCCCAGAAATGAGTGATTCTGTTGAATTTGTTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGGCCTCAACACTGGCATACCGAACACGACGTATTGGTTAATGATATTGAGAATGTGAATAAGATGAAAATGGCTGTGTATGTTACTCACACCATAAATTTTCAGAACTATTGGGATAGGAGCTGCCGAAGATCGGAATTAGTCCTGGAGTTAAAGAAAATTCTTCAAGATCTTAATATTAAATATCATCTGCTGCCACAAGAAGTTCATGTCAATTATGTAAGGTCACCAGACTCAACATTGCAAGCAGTTTGA 2235 0.396 MEEERSVADKKVAKNEVVLRISDSEGAMNAEIKDSGSFPVAGSSSLSPQHKTQISKRFKDSGGEITEPLRNKDQVSTKWMTTTKRLIGQSEFSKPKSRMVDPPCPRFAKFVEEKVRMTSSFAWNSRNRNVSEATTDNPRTPLLGTPAEEEDDDEEVYMIANFEVAKRSGRKWRVFELFAFAFIMGFFIASLSLTPLQKRELWGLKMWKWCVFILAILCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWDMLFSPEVEKTSKVGRILDYIALTLASCLIGAALWLAKTLLIKLLASSFQSTRFFDRVHESIFHQYILKTLSGPPLMEMAEKVGTTSNTDQLSYKTMLNKKEGEKGQVIDAEKLKKMTQKKVSPLTMKGLINVIRSSGLSTISYAQDDDENEQKDNEINSGWEAKAAAYRIFMNVAKPGHKYIEIDDLLRFMKIEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYLGRKSLIHSLNDTNTAVDDLNILASAVVVIVTLIVWLLLTGVLTTEVLVFISSQLLLVGFMFGNTAKTVFEAIIFVFVVHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLSNKPISNFNRSPEMSDSVEFVVDVSTSIESIGALKAKLKVYLESRPQHWHTEHDVLVNDIENVNKMKMAVYVTHTINFQNYWDRSCRRSELVLELKKILQDLNIKYHLLPQEVHVNYVRSPDSTLQAV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10502g00013 744 MobiDBLite consensus disorder prediction 53 67 - -
Vium10502g00013 744 MobiDBLite consensus disorder prediction 33 68 - -
Vium10502g00013 744 Gene3D - 575 624 IPR023408 -
Vium10502g00013 744 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 9 734 IPR016688 -
Vium10502g00013 744 PIRSF Memb_At2g17000 2 743 IPR016688 -
Vium10502g00013 744 FunFam Predicted mechanosensitive ion channel 575 624 - -
Vium10502g00013 744 Pfam Mechanosensitive ion channel 519 721 IPR006685 GO:0016020|GO:0055085
Vium10502g00013 744 MobiDBLite consensus disorder prediction 38 52 - -
Vium10502g00013 744 SUPERFAMILY Sm-like ribonucleoproteins 565 624 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10502g00013 Vium-Chr10502 43903 47363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10502g00013 63 731 Mechanosensitive Ion Channel Family AT5G12080 48.099 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10502g00013 K22048 - gmx:100777332 1040.41