Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10502g00012 ATGGAAGAAGAAGGAGACGTGGCAGACAAGAAAAAGACAAAGAACGAGGTGGTTCTACGAATTTCAGACACTGAAGAAGCCATTAATACAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAACAGTTCCCTTTCTCCTCAGCATAATACTCAGATAGGTAAAGGGTTTACAGATTCTCATGGTGAAATCACAGAGTGCAATGGTCAAGTATCCGCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCAACGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTCAAAAGACAAGTTCACCTGCAAGGAATTCTCCTAACAAGAAAGTTCCTGACGCTACTGTTGTCACCCCAAGAAGCCCCTTCCTTGGGACACCAGGGGAAGAAGAAGATGATGACGAAGAAGTGTACAAGACTGCAAATGTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGAGAGTTGTAGAGTTGTTTGCTTTTGCTTGCATCGTGGGGTTTTTTGTTGCATGCTTGACTGTGAATGAATTGAAAAAAAGGTTGATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGCTTTGGTTGTCCTCTGTGGTAGACTGGTCACTGAGTGGTTTATCAATATTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTTCTGACATGGGGACTGCTTTTCAACCATGGAGTGGAGAGAACCAGAAAGGTTACTAAGATTCTTAATTACATTACTAGGGCCCTTGCTTCTTGTCTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAACTTTTAGCTTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGATTTCAAATAGTCAGCAACTCAGTTTTAAGACCATGAATAATGAGAATGAAGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAAAAAGTTTCTGCTTGGACTATGAAAGGTTTGATTAATGTGATAAAGAGTTCTGGGTTGTCTACCATCTCCTATGCACCAGACGAAGATGAGAATGACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTCGGGAACGTAGCCAAGCCAGGACACATTTATATTGATAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTAAAAGTCTACTTTGAACGCCGGTCGCTCGTACATTCACTAAATGATACCAACACAGCTGTTGATGACTTGAATATGCTTGCTTCTTTCCTTGTGCTTATTGTGATCCTTATTGTGTGGCTTCTTATAATGGGCTTCTTGACAACTGAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGTTGTGTTATTGATGGAAGTGTCAGTCCCTGA 1767 0.4041 MEEEGDVADKKKTKNEVVLRISDTEEAINTKEQRVSRSFPVAENSSLSPQHNTQIGKGFTDSHGEITECNGQVSAELVTTTKRLMGRSEFSKPKSRMVEPTCPKDANFVEEKAQKTSSPARNSPNKKVPDATVVTPRSPFLGTPGEEEDDDEEVYKTANVEVSKRSGKKWRVVELFAFACIVGFFVACLTVNELKKRLIWGLELWKWCVLALVVLCGRLVTEWFINILVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWGLLFNHGVERTRKVTKILNYITRALASCLLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWISNSQQLSFKTMNNENEGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKSSGLSTISYAPDEDENDQKDNEINSEWEAKAAAYRIFGNVAKPGHIYIDKDDLLRFMKNEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYFERRSLVHSLNDTNTAVDDLNMLASFLVLIVILIVWLLIMGFLTTEVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGSVSP 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10502g00012 588 MobiDBLite consensus disorder prediction 109 149 - -
Vium10502g00012 588 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 8 584 IPR016688 -
Vium10502g00012 588 MobiDBLite consensus disorder prediction 29 63 - -
Vium10502g00012 588 MobiDBLite consensus disorder prediction 33 63 - -
Vium10502g00012 588 MobiDBLite consensus disorder prediction 112 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10502g00012 Vium-Chr10502 39476 41862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10502g00012 80 584 Mechanosensitive Ion Channel Family AT5G12080 50.870 9.23e-177 516