Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10502g00011 ATGGAAGAAGAAGGAGACGTGGCAGACAAGAAAAAGACAAAGAACGAGGTGGTTCTACGAATTTCAGACACTGAAGAAGCCATTAATACAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAACAGTTCCCTTTCTCCTCAGCATAATACTCAGATAGGTAAAGGGTTTATAGATTCTCATGGTGAAATCACAGAGTGCAATGGTCAAGTATCCGCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCAACGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTCAAAAGACAAGTTCACCTGCAAGGAATTCTCCTAATAAGAATGTTCCTGACGCTACTGTTGTCACCCCAAGAAGCCCCTTCCTTGGGACACTAGGGGAAGAAGAAGATGATGACGAAGAAGTGTACAAGACTGCAAATTTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGAGAGTTGTAGAGTTGTTTGCTTTTGCTTGCATCGTGGGGTTTTTTGTTGCATGCTTGACTGTGAATGAATTGAAAAAAAGGTTGATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGCTTTGGTTGTCCTCTGTGGTAGACTGGTCACTGAGTGGTTTATCAATATTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTTCTGACATGGGTACTGCTTTTCAACCATGGAGTGGAGAGAACCAGAAAGGTTACTAAGATTCTTAATTACATTACTAGGGCCCTTGCTTCTTGTCTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAACTTTTAGCTTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGATTTCAAATAGTCAGCAACTCAGTTTTAAGACCATGAATAATGAGAATGAAGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAAAAAGTTTCTGCTTGGACTATGAAAGGTTTGATTAATGTGATAAAGAGTTCTGGGTTGTCTACCATCTCCTATGCACCAGACGAAGATGAGAATTACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTCGGGAACGTAGCCAAGCCAGGACACATTTATATTGATAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTAAAAGTCTACTTTGAACGCCGGTCGCTCGTACATTCACTAAATGATACCAACACAGCTGTTGATGACTTGAATATGCTTGCTTCTTTCCTTGTGCTTATTGTGATCCTTATTGTGTGGCTTCTTATAATGGGCTTCTTGACAACTGAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGTTGTGTTATTGATGGAGTTCAGATGATTGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCGGTTCTGGCAACCAAGCCAATCGGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGTTGTTGATGTTTCTACTTCTGTTGAAAGTATTGGAGCTTTGAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGACCTCAACATTGGCGTCCCAATCACAATGTAGTGGTTAAGGATATTGAGAATGTGAATAAGTTGAAAATAGCTCTATATGTTACTCACACCATAAATTTTCAAAACTACGGGGAGAAGAACAACCGAAGATCCGAATTAGTCCTGGAGTTAAAGAAAATTTTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATCTCAGTTATGTAAGGTCACAAGACTCAACAGCACAGACATTTTGA 2229 0.3912 MEEEGDVADKKKTKNEVVLRISDTEEAINTKEQRVSRSFPVAENSSLSPQHNTQIGKGFIDSHGEITECNGQVSAELVTTTKRLMGRSEFSKPKSRMVEPTCPKDANFVEEKAQKTSSPARNSPNKNVPDATVVTPRSPFLGTLGEEEDDDEEVYKTANFEVSKRSGKKWRVVELFAFACIVGFFVACLTVNELKKRLIWGLELWKWCVLALVVLCGRLVTEWFINILVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWVLLFNHGVERTRKVTKILNYITRALASCLLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWISNSQQLSFKTMNNENEGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKSSGLSTISYAPDEDENYQKDNEINSEWEAKAAAYRIFGNVAKPGHIYIDKDDLLRFMKNEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYFERRSLVHSLNDTNTAVDDLNMLASFLVLIVILIVWLLIMGFLTTEVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLATKPIGNFYRSPEMSDSVEFVVDVSTSVESIGALKAKLKVYLESRPQHWRPNHNVVVKDIENVNKLKIALYVTHTINFQNYGEKNNRRSELVLELKKIFEDLNIKYHLLPQEVHLSYVRSQDSTAQTF 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10502g00011 742 Pfam Mechanosensitive ion channel 515 719 IPR006685 GO:0016020|GO:0055085
Vium10502g00011 742 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 8 732 IPR016688 -
Vium10502g00011 742 MobiDBLite consensus disorder prediction 111 148 - -
Vium10502g00011 742 Gene3D - 573 622 IPR023408 -
Vium10502g00011 742 PIRSF Memb_At2g17000 2 741 IPR016688 -
Vium10502g00011 742 FunFam Predicted mechanosensitive ion channel 573 622 - -
Vium10502g00011 742 SUPERFAMILY Sm-like ribonucleoproteins 563 622 IPR010920 -
Vium10502g00011 742 MobiDBLite consensus disorder prediction 33 57 - -
Vium10502g00011 742 MobiDBLite consensus disorder prediction 112 132 - -
Vium10502g00011 742 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10502g00011 Vium-Chr10502 33368 37078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10502g00011 80 730 Mechanosensitive Ion Channel Family AT5G12080 52.576 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10502g00011 K22048 - gmx:100777332 1175.61