Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10502g00010 ATGGAAGAAGAAGGAGACGTGGCAGACAAGAAAAAGACAAAGAACGAGGTGGTTCTACGAATTTCAGACACTGAAGAAGCCATTAATACAAAGGAGCAAAGGGTTTCCAGAAGCTTCCCAGTAGCTGAAAACAGTTCCCTTTCTCCTCAGCATAATACTCAGATAGGTAAAGGGTTTATAGATTCTCATGGTGAAATCACAGAGTGCAATGGTCAAGTATCCGCAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGGTCGGAGTTTTCAAAACCAAAGTCCAGAATGGTGGAACCAACGTGTCCAAAAGATGCAAACTTTGTCGAAGAAAAGGCTCAAAAGACAAGTTCACCTGCAAGGAATTCTCCTAATAAGAATGTTCCTGACGCTACTGTTGTCACCCCAAGAAGCCCCTTCCTTGGGACACTAGGGGAAGAAGAAGATGATGACGAAGAAGTGTACAAGACTGCAAATTTTGAAGTGAGCAAGAGATCTGGTAAGAAGTGGAGAGTTGTAGAGTTGTTTGCTTTTGCTTGCATCGTGGGGTTTTTTGTTGCATGCTTGACTGTGAATGAATTGAAAAAAAGGTTGATTTGGGGATTGGAACTGTGGAAATGGTGTGTATTGGCTTTGGTTGTCCTCTGTGGTAGACTGGTCACTGAGTGGTTTATCAATATTTTGGTTTTCTTGATTGAGAGGAACTTTTTGTTTAAGAAGAAGGTTTTGTATTTTGTCTATGGTGTGAAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTTCTGACATGGGTACTGCTTTTCAACCATGGAGTGGAGAGAACCAGAAAGGTTACTAAGATTCTTAATTACATTACTAGGGCCCTTGCTTCTTGTCTTCTTGGAGCAGCTATATGGTTGGTCAAAACATTGTTGATAAAACTTTTAGCTTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTGCAAGAATCAATCTTTCATCAATACATTCTCAAGACTCTTTCAGGTCCTCCCTTGAGGGAGGTGGCTGAAAATGTAGGTTGGATTTCAAATAGTCAGCAACTCAGTTTTAAGACCATGAATAATGAGAATGAAGGGGAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACCAGAAAAAGTTTCTGCTTGGACTATGAAAGGTTTGATTAATGTGATAAAGAGTTCTGGGTTGTCTACCATCTCCTATGCACCAGACGAAGATGAGAATTACCAGAAAGATAATGAAATTAATAGCGAGTGGGAAGCAAAGGCAGCTGCATACAGAATTTTCGGGAACGTAGCCAAGCCAGGACACATTTATATTGATAAGGATGACCTCTTGCGATTCATGAAAAATGAAGAAGTGGAAAACTTGCTTCCACTATTTGAAGGTGCAGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCCATTATATTTGTTTTTGTGATGCACCCTTTTGATGTTGGTGATCGTTGTGTTATTGATGGAGTTCAGATGATTGTGGAAGAGATGAACATACTAACTACCGTCTTTCTGAGATATGACAATGAAAAGATTTTCTATCCAAATTCGGTTCTGGCAACCAAGCCAATCGGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGTTGTTGATGTTTCTACTTCTGTTGAAAGTATTGGAGCTTTGAAGGCAAAGTTAAAAGTATATTTGGAGAGTAGACCTCAACATTGGCGTCCCAATCACAATGTAGTGGTTAAGGATATTGAGAATGTGAATAAGTTGAAAATAGCTCTATATGTTACTCACACCATAAATTTTCAAAACTACGGGGAGAAGAACAACCGAAGATCCGAATTAGTCCTGGAGTTAAAGAAAATTTTTGAAGATCTTAATATTAAATATCATCTGCTCCCACAAGAAGTTCATCTCAGTTATGTAAGGTCACAAGACTCAACAGCACAGACATTTTGA 2055 0.3908 MEEEGDVADKKKTKNEVVLRISDTEEAINTKEQRVSRSFPVAENSSLSPQHNTQIGKGFIDSHGEITECNGQVSAELVTTTKRLMGRSEFSKPKSRMVEPTCPKDANFVEEKAQKTSSPARNSPNKNVPDATVVTPRSPFLGTLGEEEDDDEEVYKTANFEVSKRSGKKWRVVELFAFACIVGFFVACLTVNELKKRLIWGLELWKWCVLALVVLCGRLVTEWFINILVFLIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWVLLFNHGVERTRKVTKILNYITRALASCLLGAAIWLVKTLLIKLLASKFQSTRFFDRVQESIFHQYILKTLSGPPLREVAENVGWISNSQQLSFKTMNNENEGEKEQVIDVDKLKKMKPEKVSAWTMKGLINVIKSSGLSTISYAPDEDENYQKDNEINSEWEAKAAAYRIFGNVAKPGHIYIDKDDLLRFMKNEEVENLLPLFEGAVETRRIKRKSLKNWLLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIFYPNSVLATKPIGNFYRSPEMSDSVEFVVDVSTSVESIGALKAKLKVYLESRPQHWRPNHNVVVKDIENVNKLKIALYVTHTINFQNYGEKNNRRSELVLELKKIFEDLNIKYHLLPQEVHLSYVRSQDSTAQTF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10502g00010 684 Pfam Mechanosensitive ion channel 490 661 IPR006685 GO:0016020|GO:0055085
Vium10502g00010 684 MobiDBLite consensus disorder prediction 111 148 - -
Vium10502g00010 684 PIRSF Memb_At2g17000 2 489 IPR016688 -
Vium10502g00010 684 PIRSF Memb_At2g17000 488 683 IPR016688 -
Vium10502g00010 684 SUPERFAMILY Sm-like ribonucleoproteins 505 564 IPR010920 -
Vium10502g00010 684 Gene3D - 515 564 IPR023408 -
Vium10502g00010 684 FunFam Predicted mechanosensitive ion channel 515 564 - -
Vium10502g00010 684 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 8 488 IPR016688 -
Vium10502g00010 684 MobiDBLite consensus disorder prediction 33 57 - -
Vium10502g00010 684 MobiDBLite consensus disorder prediction 112 132 - -
Vium10502g00010 684 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10502g00010 Vium-Chr10502 33368 37078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10502g00010 80 672 Mechanosensitive Ion Channel Family AT5G12080 48.485 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10502g00010 K22048 - gmx:100777332 1045.8