Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10502g00008 ATGTTAACGTGCTTTGAGAGAAATGGTGGTGGAGGCAGAAGTGGAATGAGAGGTCCAAATTTTGGGCATATTTGCCTCTATCTGACGTGGCAGCTTTCCTATTGGAAATTGATGGATAAGGTTATCTTATCTGTCCTATCATTACCCTTTGCTGAAATATCAATTAATATGATTTTAAAGTNCGCGATTCCGGCGATAATTAATGGCGACGTCGACGCCAAACCGCTTGTTCAGGTTTTGGACGTTACCTTAGTCTCCAACAGCAACAACTCGCAGCAGCAGAGATACCGTCTCCTGATTTCCGACGCCGTTTCGTCTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGAATCCGGACCGGTCGAGTTCGGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCACTCCTTTCAAGAACCGCAAGATTATTATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAAATCATTGGGAATCCGAAGCCACCCTTGGATTCAGATTTACCAAGTGTGAGGGCTATAGCAGATAACACTGTGGAGAGTTTGGCCAGGAGTAATAATACTAGTAATACTATTAGTAACTCTGCTGCTCAAAATGCAAGTCATGATAAAGCCCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCTGTTTACAAAGGCCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGCCGCTACAATAATGCACGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGATTCTATAGTGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAAACATTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTAGAGTTGTGCCCGGATGAAGATGATTCTATACCTAGACAGCAGTTCTCATTCCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAGTTTTGAGTCTAAAAGACACTTCTGGCAAGAGTGTTGAACTTACCCTGTGGGGAGAATTTTGCAATAGGGAAGGGCAACAGTTGCAAGAGATGGTAGATTCTGGGTTTTTCCCTATTTTAGCTGTCAAAGCGGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGACAATGGTTTGATCTAGTTGGAAAAGATTCTGCTTCCCTTTCAATTTCTAGGGACGTTATTCCTGGAGGAACGAAGAATGAGGTTCGTAAAACTGTATCTCAAATCAAGGATGAAGGTCTGGGACGATCAGACAAGCCAGACTGGATAACAATAAGGGCAACCATAGCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAATGCAATAAAAAAGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAATCAAGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATGGCACAGGATTAACTTGGGTAACTGCTTTTCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAGCATGAACAACAGGATGATGAGAGGTTTGCAGAAGTACTCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTGAATTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGAAGTGA 2064 0.4196 MLTCFERNGGGGRSGMRGPNFGHICLYLTWQLSYWKLMDKVILSVLSLPFAEISINMILKXAIPAIINGDVDAKPLVQVLDVTLVSNSNNSQQQRYRLLISDAVSSHHAMLATQLNDRIRTGRVRKGSVVQLLDYICTPFKNRKIIMVLNMETIIADFEIIGNPKPPLDSDLPSVRAIADNTVESLARSNNTSNTISNSAAQNASHDKAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYSVIEVGKVYMISKGSLKPAQKNFKHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRVLSLKDTSGKSVELTLWGEFCNREGQQLQEMVDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLRQWFDLVGKDSASLSISRDVIPGGTKNEVRKTVSQIKDEGLGRSDKPDWITIRATIAFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDERFAEVLKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10502g00008 687 CDD RPA1_DBD_C 510 683 IPR047192 -
Vium10502g00008 687 Gene3D - 240 350 IPR012340 -
Vium10502g00008 687 PANTHER REPLICATION FACTOR A 1, RFA1 254 662 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium10502g00008 687 FunFam Replication protein A subunit 353 491 - -
Vium10502g00008 687 SUPERFAMILY Nucleic acid-binding proteins 240 354 IPR012340 -
Vium10502g00008 687 MobiDBLite consensus disorder prediction 189 229 - -
Vium10502g00008 687 CDD RPA1_DBD_B 375 482 - -
Vium10502g00008 687 Pfam Replication factor-A protein 1, N-terminal domain 61 154 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium10502g00008 687 SUPERFAMILY Nucleic acid-binding proteins 507 684 IPR012340 -
Vium10502g00008 687 FunFam Replication protein A subunit 57 167 - -
Vium10502g00008 687 FunFam Replication protein A subunit 240 349 - -
Vium10502g00008 687 MobiDBLite consensus disorder prediction 189 215 - -
Vium10502g00008 687 Pfam OB-fold nucleic acid binding domain 255 338 IPR004365 GO:0003676
Vium10502g00008 687 Gene3D - 353 490 IPR012340 -
Vium10502g00008 687 Gene3D - 58 167 IPR012340 -
Vium10502g00008 687 SUPERFAMILY Nucleic acid-binding proteins 358 485 IPR012340 -
Vium10502g00008 687 NCBIfam replication factor-a protein 1 (rpa1) 69 683 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium10502g00008 687 Pfam Replication factor-A C terminal domain 526 677 IPR013955 -
Vium10502g00008 687 SUPERFAMILY Nucleic acid-binding proteins 62 163 IPR012340 -
Vium10502g00008 687 FunFam Replication protein A subunit 492 684 - -
Vium10502g00008 687 Gene3D - 496 685 IPR012340 -
Vium10502g00008 687 CDD RPA1_DBD_A 243 346 - -
Vium10502g00008 687 CDD RPA1N 62 155 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium10502g00008 687 Pfam Replication protein A OB domain 364 468 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10502g00008 Vium-Chr10502 27071 30033 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10502g00008 79 679 Core DNA Replication Machinery Family AT2G06510 69.692 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10502g00008 K07466 - gmx:100792409 1091.64