Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10502g00006 ATGTCAGTGAATCTCACCGAAAACGCGATTCCGGCGATAATTAATGGCGACGTCGACGCCAAACCGCTTGTTCAGGTTTTGGACGTTACCTTAGTCTCCAACAGCAACAACTCGCAGCAGCAGAGATACCGTCTCCTGATTTCCGACGCCGTTTCGTCTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGAATCCGGACCGGTCGAGTTCGGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCACTCCTTTCAAGAACCGCAAGATTATTATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGATATCATTGGGAATCCGAAGCCACCCTTGGATTCAGATTTACCAAGTGTGAGGGCTATAGCAGATAACACTGTGGAGAGTTTGGCCAGGAGTAATAATACTAGTAATACTATTAGTAACTCTGCTGCTCAAAATGCAAGTCATGATAAAGCCCAGAGTTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCTGTTTACAAAGGCCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGTGATCTGCGCCGCTACAATAATGCACGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGATTCTATAGTGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTAGAGTTGTGCCCGGATGAAGATGATTCTATACCTAGACAGCAGTTCTCATTCCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTTGTGACATCTGTGAACCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAGTTTTGAGTCTAAAAGACACTTCTGGCAAGAGTGTTGAACTTACCCTGTGGGGAGAATTTTGCAATAGGGAAGGGCAACAGTTGCAAGAGATGGTAGATTCTGGGTTTTTCCCTATTTTAGCTGTCAAAGCGGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAATAGCTTAAGACAATGGTTTGATCTAGTTGGAAAAGATTCTGCTTCCCTTTCAATTTCTAGGGACGTTATTCCTGGAGGAACGAAGAATGAGGTTCGTAAAACTGTATCTCAAATCAAGGATGAAGGTCTGGGACGATCAGACAAGCCAGACTGGATAACAATAAGGGCAACCATAGCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAATGCAATAAAAAAGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAATCAAGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTGGATGGCACTGGATTAACTTGGGTAACTGCTTTTCAGGAAGCAGGTGAAGAGATTATGGAGTATTCAGCGAAAGATCTGTACTTGTTGAAGCATGAACAACAGGATGATGAGAGGTTTGCAGAAGTACTCAAGAGCCGACTCTTCAAACAGTTTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTTAAGGTAGATAAGGTGAATTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGAAGTGA 1905 0.4247 MSVNLTENAIPAIINGDVDAKPLVQVLDVTLVSNSNNSQQQRYRLLISDAVSSHHAMLATQLNDRIRTGRVRKGSVVQLLDYICTPFKNRKIIMVLNMETIIADFDIIGNPKPPLDSDLPSVRAIADNTVESLARSNNTSNTISNSAAQNASHDKAQSFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYSVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRVLSLKDTSGKSVELTLWGEFCNREGQQLQEMVDSGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEANSLRQWFDLVGKDSASLSISRDVIPGGTKNEVRKTVSQIKDEGLGRSDKPDWITIRATIAFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDERFAEVLKSRLFKQFMFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCRK 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10502g00006 634 MobiDBLite consensus disorder prediction 136 171 - -
Vium10502g00006 634 FunFam Replication protein A subunit 300 438 - -
Vium10502g00006 634 FunFam Replication protein A subunit 187 296 - -
Vium10502g00006 634 FunFam Replication protein A subunit 4 114 - -
Vium10502g00006 634 CDD RPA1_DBD_C 457 630 IPR047192 -
Vium10502g00006 634 SUPERFAMILY Nucleic acid-binding proteins 187 301 IPR012340 -
Vium10502g00006 634 Gene3D - 443 632 IPR012340 -
Vium10502g00006 634 Pfam Replication factor-A C terminal domain 473 624 IPR013955 -
Vium10502g00006 634 SUPERFAMILY Nucleic acid-binding proteins 454 631 IPR012340 -
Vium10502g00006 634 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium10502g00006 634 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Vium10502g00006 634 CDD RPA1_DBD_B 322 429 - -
Vium10502g00006 634 SUPERFAMILY Nucleic acid-binding proteins 305 432 IPR012340 -
Vium10502g00006 634 Pfam Replication protein A OB domain 311 415 IPR031657 -
Vium10502g00006 634 MobiDBLite consensus disorder prediction 136 162 - -
Vium10502g00006 634 PANTHER REPLICATION FACTOR A 1, RFA1 201 609 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium10502g00006 634 NCBIfam replication factor-a protein 1 (rpa1) 4 630 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium10502g00006 634 CDD RPA1_DBD_A 190 293 - -
Vium10502g00006 634 Gene3D - 3 114 IPR012340 -
Vium10502g00006 634 Gene3D - 187 297 IPR012340 -
Vium10502g00006 634 Pfam OB-fold nucleic acid binding domain 202 285 IPR004365 GO:0003676
Vium10502g00006 634 FunFam Replication protein A subunit 439 631 - -
Vium10502g00006 634 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium10502g00006 634 Gene3D - 300 437 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10502g00006 Vium-Chr10502 23520 26302 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10502g00006 26 626 Core DNA Replication Machinery Family AT2G06510 69.692 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10502g00006 K07466 - gmx:100792409 1102.04