Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10487g00002 ATGAAGGCCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCGGCCTCAGATTCATTTTCATTGCTTTTGCATCATCCACAACCAAAGTGGACCATAGACAAAGAGGATTATTGCTATGTGGGCAGCACTGAGCCCACCTCAGTTCTTGACTCCAGAAGAAGCCCAAGCCCTCCCACTTCCTCCTCTACAATGTCCTCTTCTCTTGGCAGCAACAGCACCAGCAAGGGTGGCAGTGGCACTTCAGCCACCACCACTACCACCACTGGTGCTGCAGCCCCTACGCCCTCTGACAACAACAACCCTCCTCCGGATTCCAGCCCTGAAAAATGTGGCATCAGGATGGATGACTGGGAGGGTCAAGATCAATCCATTCTCAGGCTAATCATGGGCGATGTTGAAGACCCTTCTGCTGGATTGAGCAAGCTTTTGCAAAGCACTGCCTGTGGTTCTCAAAGTGTTGATTTCAATGCAGGCTTCGGTGTTGTGGATCAAGGGTTGAATATGGTGAGTGGTGCTATTGACCCTTCTGGGAATTACCCTGCTGGTTTCCCTTTCATTGCTGAGAATATTGATGCCCACAATGGCAAGCCTGGTTCTGTGGCTGGCCAGGTTTCAGAATCTGTTGTTTTCTCTGCCAATAATCCTCTTATGGTGTCACCATCTGTGTCTCCTGGTGTGTTCACTTCTCAGCAGCAGCATGAATTTGGAGTGGTGGATGAGAAGCCTCAGGTCATCAACCCCCAGTTCATGTTAAACCAGAACCAAGTTCAGTTCTCAGAGAACCCTTCTTTCTTTGTGCCATTGATGTATCCCCAGGTTCAGGAGCAGCAGGTTTTCCCTCAGCATCAAGCAAAACGCCCTCTCTTTGACACAATTGGGCACAATTATCAGGCTCCAAGGTTGCCCCTTTTGGATTCGGGGCAAGAGGTGTTTGGCAGGAGGCAGCAAACACAGCTTCCATTATTTCCTCACCATATGCAACAGCAACAACATCAACATCAATCAATTGTTATGCCATCTGCTAAACAGCAGAAGGTGAGTTCCGCCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCTATATTTGATCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCAATTGGTAAGCCTTTTCAGAGGGCTGCTTTCTATATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACTCTTTCATGGCTTTCTCACCAATCAGTTTCATATTCAAAATTGGAGCTTACAAGTCCTTTTCTGAGATATCACCTGTTCTTCAGTTTGCAAACTTTACTTGTAACCAAGCCCTTATTGAAGCTGTAGAAAGGTTCGACCGAATTCATGTCATTGATTTTGATATTGGGTTTGGAGTGCAGTGGTCATCTTTCATGCAAGAAATTGCCTTGAGAAGCAGTGCTGCACCTTCCCTCAAAGTCACTGCGATTGTGTCACCCTCCACTTGTGATGAGGTTGAACTCAATTTTACTAAAGAAAATTTGATGCAATACGCGAAGGACATCAACGTGTCTTTTGAGTTCAGTGTTCTGAACATTGAATCTTTGCACTCTCCTTCTTCTCCACTGCTTGGCCAATTCTTTGACAATGAGGCTATTGCTGTGAACATGCCAGTTTCAAGTTTCACAAACAATCCATCACTGTTCCCTTCAGCTCTTCACTTTGTAAAGCAGCTCAGGCCAAAGGTTGTGGTCACATTGGATAGAATTTGTGATCGAATTGACGTGTCACTTCCCACAAATGCAGTCCACGTTCTCCAATGTTATTCAGCGTTGCTGGACTCTCTGGACGCTGTGAATGTGAATCTTGATGTTCTTCAAAAGATTGAGAGGCATTTCATTCAACCAGCCATCAAGAAAATCATTCTTGGCCACCACCATTCTCAAGAGAAACTCCCTCCATGGAGGAACCTCTTTCTACAATCTGGATTTTCTCCATTCACATTCAGCAACTTCACTGAAGCTCAAGCTGAGTGTTTAGTTCAGAGGGCACCTGTGAGGGGATTTCACGTGGAAAGAAAGCCTTCATCTCTTGTTCTATGCTGGCAGAGGAAAGAACTCATCTCAGTCTCTACTTGGAGATGCTGA 2181 0.4626 MKAMPLPFEEFQGKGVLDFSSASDSFSLLLHHPQPKWTIDKEDYCYVGSTEPTSVLDSRRSPSPPTSSSTMSSSLGSNSTSKGGSGTSATTTTTTGAAAPTPSDNNNPPPDSSPEKCGIRMDDWEGQDQSILRLIMGDVEDPSAGLSKLLQSTACGSQSVDFNAGFGVVDQGLNMVSGAIDPSGNYPAGFPFIAENIDAHNGKPGSVAGQVSESVVFSANNPLMVSPSVSPGVFTSQQQHEFGVVDEKPQVINPQFMLNQNQVQFSENPSFFVPLMYPQVQEQQVFPQHQAKRPLFDTIGHNYQAPRLPLLDSGQEVFGRRQQTQLPLFPHHMQQQQHQHQSIVMPSAKQQKVSSAGDDASHQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHSNAHSFMAFSPISFIFKIGAYKSFSEISPVLQFANFTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQEIALRSSAAPSLKVTAIVSPSTCDEVELNFTKENLMQYAKDINVSFEFSVLNIESLHSPSSPLLGQFFDNEAIAVNMPVSSFTNNPSLFPSALHFVKQLRPKVVVTLDRICDRIDVSLPTNAVHVLQCYSALLDSLDAVNVNLDVLQKIERHFIQPAIKKIILGHHHSQEKLPPWRNLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWRC 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10487g00002 726 ProSiteProfiles GRAS family profile. 359 725 IPR005202 -
Vium10487g00002 726 MobiDBLite consensus disorder prediction 51 121 - -
Vium10487g00002 726 Pfam GRAS domain family 370 725 IPR005202 -
Vium10487g00002 726 MobiDBLite consensus disorder prediction 51 102 - -
Vium10487g00002 726 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 339 721 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10487g00002 Vium-Chr10487 46685 49725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10487g00002 367 726 GRAS Transcription Factor Family AT4G00150 54.821 1.95e-126 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium10487g00002 GRAS 1.5e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10487g00002 - - gmx:100801785 1191.79