Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10485g00001 ATGCAAGGGAAGAGTTCTCCCCCTCTTGATGAGGTGAAAAAAGAAGCTTTCAACTTTCCTATTCCTCTCACACCATCTCAAAATCCAAAAGAACAAGCTTCATCATCAACCTTTTCAAACTTTCTTATGACTACCAACCATCAAAACACCACCTTCTTCCCCACTCCACATGGTCAAATAACCACTTCTAAATTTATCAATACCCAAGATCCATCTCAAGCTACAAATCAAGGTAATGCTGATCTTAGGAAAAGGCACTATAGAGGAGTTAGGCAAAGACCTTGGGGAAAATGGGCAGCTGAGATAAGAGACCCTAAGAAAGCAGCGAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCAATGGCCTATGATGTTGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAGCGTGTTGCTGTGCCACCACCATCACCGGAAACCACCACCACCATTTCTTCAGCTTCTGCACAACCCTCTTCCCTCACGTCACCACCACCACATGTTGGTGGCGATCATCAAAGTCTAGAAACATCAGAAGAAGCAGAAGGGTTTCCAAGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGGGATGATGATGATTTCCAACGTGTTGCATTGGGGCTTTACCAGCACCATCCCAATGAGGATGTTATCTACGGTTCATCTCAGCCACCACCTGCGCCATTTTTTCTGTCTTCTTCATCTTCTTCTACATTTGCATCTTCAACTTCTCAGGGTGATTATGGTTCTTCTGGATTCTTTAGTCAAGGAGGGAGTGGTTTTGATGAAGGGAACAAGAGAGGATCATAG 837 0.4468 MQGKSSPPLDEVKKEAFNFPIPLTPSQNPKEQASSSTFSNFLMTTNHQNTTFFPTPHGQITTSKFINTQDPSQATNQGNADLRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGNKAKLNFPERVAVPPPSPETTTTISSASAQPSSLTSPPPHVGGDHQSLETSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHPNEDVIYGSSQPPPAPFFLSSSSSSTFASSTSQGDYGSSGFFSQGGSGFDEGNKRGS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10485g00001 278 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Vium10485g00001 278 MobiDBLite consensus disorder prediction 21 35 - -
Vium10485g00001 278 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Vium10485g00001 278 MobiDBLite consensus disorder prediction 151 175 - -
Vium10485g00001 278 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Vium10485g00001 278 PANTHER DNA-BINDING DOMAIN 44 186 IPR044808 GO:0003700|GO:0009873
Vium10485g00001 278 MobiDBLite consensus disorder prediction 235 267 - -
Vium10485g00001 278 MobiDBLite consensus disorder prediction 143 190 - -
Vium10485g00001 278 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Vium10485g00001 278 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Vium10485g00001 278 MobiDBLite consensus disorder prediction 226 278 - -
Vium10485g00001 278 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Vium10485g00001 278 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Vium10485g00001 278 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Vium10485g00001 278 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Vium10485g00001 278 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10485g00001 Vium-Chr10485 5663 7802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10485g00001 67 148 AP2-EREBP Transcription Factor Family AT5G61890 78.824 3.09e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium10485g00001 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10485g00001 - - gmx:100806383 278.1