Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10480g00001 ATGGACGAAATCGACGTGCCTCCCTTCTTCCTCTGTCCTATCTCCCTCGAACTCATGAAAGACCCCGTGACAGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCCAACAACGACACGTGTCCCGTCACCAAGCAGCCTCTCCTCCCAGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCCTGGTGCACCGTCAACGCCTCCCATGGCATCCAACGAATTCCAACGCCCAAGCCCCCCGTCGACAAAACCATCATCCAAAACCTTCTCAAAGACGCTTCCGGCTCCCCAAACCTCCAGCTTCAGTGCCTCCGAACCCTAAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCCATCGAATCCGCAGGCGCTGTTAAATTCCTAGCTTCGGTTATAACCAACACTGTAAACTCCTGTTTAGACGATGACGTGGAGCTGGAGTTGAAAGCAAGCGTGGCGGATGAAGCATTGAGCTTGTTACACAACCTTCACTTGTCCGAACCGGGTTTGAAGACTCTACTGAGTCACCCCGAGTTTCTAAACTCGTTAACCAAGGTTATGCAGAGAGGAATCTACGAGTCACGCGCTTACGCTGTTTTTCTACTGAAGTCGTTGTCGGAAGTGGCGGAGCCGGTGCAGTTAAATAACCTGAAACCGGAATTGTTTGTCGAACTGGTTCAAGTCCTGAAGGACCAGATTTCGCAGAAGGGTTCCAAGGCCACACTTCAGACGCTGATTCAGGTGTGTCCGTGGGGGAGGAACAGGGTGAAAGCGGTGGAGGCCGGGGCGGTGCCGGTTATCGTGGAGCTTCTTCTTGAATACAGGGAGAGGAAGCCCTGCGAGATGATGCTCGTTGTGTTGGAGACTCTGTGTCAGAGCGCGGACGGGCGCGCGGAGTTGCTGGCGCACGCGGCGGGGGTGGCGATCGTGGCCAAGAAGATTCTGAGGGTGTCGACGATGGCGAACGACAGGGCGACGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCCAGCGTGTTGCAGGACATGGTGCAGCTGGGGGTGGTTGCGAAACTCTGCTTGGTGCTGCAGGTGGACAGTGGGAACAAGGCGAAGGAAAAAGCCAAGGAGATTCTCAAACTGCACGCCAAAGCGTGGAAGAACTCGCCTTGCATACCTGTGCACTTGCTTGCTTCGTTTCCAACCAGTGCGTGA 1236 0.5542 MDEIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGIQRIPTPKPPVDKTIIQNLLKDASGSPNLQLQCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTVNSCLDDDVELELKASVADEALSLLHNLHLSEPGLKTLLSHPEFLNSLTKVMQRGIYESRAYAVFLLKSLSEVAEPVQLNNLKPELFVELVQVLKDQISQKGSKATLQTLIQVCPWGRNRVKAVEAGAVPVIVELLLEYRERKPCEMMLVVLETLCQSADGRAELLAHAAGVAIVAKKILRVSTMANDRATKILLAVCRFSATPSVLQDMVQLGVVAKLCLVLQVDSGNKAKEKAKEILKLHAKAWKNSPCIPVHLLASFPTSA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10480g00001 411 Gene3D - 93 398 IPR011989 -
Vium10480g00001 411 SUPERFAMILY RING/U-box 3 80 - -
Vium10480g00001 411 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Vium10480g00001 411 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Vium10480g00001 411 CDD RING-Ubox_PUB 7 55 IPR045210 -
Vium10480g00001 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Vium10480g00001 411 SUPERFAMILY ARM repeat 96 376 IPR016024 -
Vium10480g00001 411 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Vium10480g00001 411 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Vium10480g00001 411 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10480g00001 Vium-Chr10480 19483 21306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10480g00001 2 408 U-box Gene Family AT2G35930 57.005 1.74e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10480g00001 - - gmx:100795263 643.269