Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1047g00004 ATGTCTCTCTTCTTATCTTGCTCCCTCCTTGCCTTGGTCCTAATCGTCACTCTCAAGTTCCTTTTCCAAAGAAACAGAAAGTTCAGAAACCTTCCACCGGGTCCCAATGCTCTTCCCATAATAGGCAACCTTAATCTCGTCGAACAACCAATCCACCGCTTTTTTCAGCGCGTGTCCCAAAAATATGGCAAAATCATTTCCCTCTGGTTCGGCTCTCGTCTCGTGGTTGTTGTTTCCTCACCCTCAGCATACCAAGAATGCTTCACCAAACACGACGTTACCTTGGCCAACCGCGTGCGCTCCCTCTCCGGGCAGTACATCTTCTACGACTGTACCACCGTAGGGTCCTGCTCCCACGGCGAGCACTGGCGTAACCTCCGCCGCATCACTTCCCTCGACGTCCTCTCCACGCAGCGCGTCCACTCCTTCTCCGGAATCCGAAGCGACGAAACCAAGCGCCTGATTAACAGGTTGGCCAGGAACTCCAGTGTGGATTATGCGCGCATGGAGATAACTTCCATGTTCAACGACTTGACCTACAACAACATCATGAGAATGATATCGGGGAAGAGGTTTTACGGGGAGGAGACTGACATGCAGAACGTGGAGGAAGCCCGGGAGTTCAGAGATTGCGTGTCGGAGATGCTCAAACTCATGGGCTTATCTAACAAGGGTGACTACTTGCCTTTCCTGAGGTGGTTCGATTTCCAGAACGTCGAGAAGCGGCTGAAGAACATTAGCGACAGGTACGATACCATCTTGAACAAGATCTTGGATGAGAACCGTAACAGCAAGGATCGTGAGAATTCCATGATCGACCATCTCCTCAAACTGCAAGAGACTCAGCCTGAGTATTACACTGACCAAATCATCAAAGGCCTTGCTTTGGCTATGCTTTTTGGCGGAACAGACTCATCAACTGGAACTTTGGAGTGGGCTTTATCTAATTTGTTGAATCACCCAGAGGTGTTGAAGAAGGCGAGAGAAGAATTGGATGCTCAAGTTGGACAAGATAGATTGTTGAATGAATCAGACCTTCCAAAACTTCCTTATCTTAGGAAGATCATTCTTGAGACACTCAGGCTGTATCCCCCAGCTCCAATTCTAATTCCACACGTGGCTTCAGAAGATATCACTGTTGAAGGATACAATATCCCGAAAGACTCGATAGTGATTGTCAATGGTTGGGCCATGCAGAGAGACCCTGATCATTGGAAGGATGCTACAAGCTTTAAACCTGAGAGGTTTGATGAAGAAGGAGAGGAGAAAAAGTTAGTAGCTTTTGGAATGGGAAGAAGGGCTTGCCCTGGAGAACCCATGGCTATGCAGAGCGTGAGCTACACCATTGGATTGTTGGTTCAATGTTTTGACTGGAAACGGGTTAATGATGAAAAGCTTGACATGACAGAGAACAATTGGATCACATTGTCAAGGCTAATTCCACTCGAGGCCATGTGTAAAGCTCGCCCTCTCGCTAAAAAAATTGGAAGCTTTTAA 1497 0.477 MSLFLSCSLLALVLIVTLKFLFQRNRKFRNLPPGPNALPIIGNLNLVEQPIHRFFQRVSQKYGKIISLWFGSRLVVVVSSPSAYQECFTKHDVTLANRVRSLSGQYIFYDCTTVGSCSHGEHWRNLRRITSLDVLSTQRVHSFSGIRSDETKRLINRLARNSSVDYARMEITSMFNDLTYNNIMRMISGKRFYGEETDMQNVEEAREFRDCVSEMLKLMGLSNKGDYLPFLRWFDFQNVEKRLKNISDRYDTILNKILDENRNSKDRENSMIDHLLKLQETQPEYYTDQIIKGLALAMLFGGTDSSTGTLEWALSNLLNHPEVLKKAREELDAQVGQDRLLNESDLPKLPYLRKIILETLRLYPPAPILIPHVASEDITVEGYNIPKDSIVIVNGWAMQRDPDHWKDATSFKPERFDEEGEEKKLVAFGMGRRACPGEPMAMQSVSYTIGLLVQCFDWKRVNDEKLDMTENNWITLSRLIPLEAMCKARPLAKKIGSF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1047g00004 498 PANTHER CYTOCHROME P450 82C3-RELATED 11 489 - -
Vium1047g00004 498 Gene3D Cytochrome P450 16 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 Coils Coil 236 256 - -
Vium1047g00004 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Vium1047g00004 498 Pfam Cytochrome P450 32 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 FunFam Cytochrome P450 family protein 22 492 - -
Vium1047g00004 498 SUPERFAMILY Cytochrome P450 32 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1047g00004 498 CDD CYP81 63 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1047g00004 Vium-Chr1047 23266 25194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1047g00004 12 495 Cytochrome P450 AT4G37340 52.147 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1047g00004 K13260 - gmx:100801092 885.945