Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10473g00001 ATGGTCACTTCTTTCGCCAACTTTCACAGATTTTGGTTCCTGCAGTTGAAGGTCATGGTGAAGGAGCTGAAGGATGACCACTCTGAAGAAGCCATGGACAGGATCATGAGACAGCACCAAGACTACTTCGTAGAAAAGTGGGAGGAGGTGGAGAGAGATCCTCTCAGCGTATTCCTTGCGCCATGGACCACCACCCTTGAGCGCTCCCTCCACTGGATCACTGGGTGGCGCCCCACCACCATCTTCCACCTCATCTACACAGAGTCTTCCCTCCTCTTTGAGTCTCACATCATCGATATCCTCTATGGCATCCGCACCGGAGACCTCGGCGACCTCAGCCCCTCCCAGTTTCGTCTCATGAGCGATCTCCAGTGTGACACTGTGAAAGAGGAGAATGAGATCACGGAAGAGCTAGCAGAGTGGCAGGAGACTGCAAGCGAGATGATGAGTTGTGAGATGGATATGACTGAGAAGATCACAGAGCTGATACCCATCATAAAAAAAGCAGATGATCTACGGATGAGAACGTTGCAGGGCGTGGTGAGGTTGCTGTCAAAACAGCAGGCTATGGAATTCTTGATTGCCTCAGGGGAGTTACTCTTTGGGATTCGCAGTTGGGGAATGACTCACGACGCATCCATTTCGTAA 648 0.5123 MVTSFANFHRFWFLQLKVMVKELKDDHSEEAMDRIMRQHQDYFVEKWEEVERDPLSVFLAPWTTTLERSLHWITGWRPTTIFHLIYTESSLLFESHIIDILYGIRTGDLGDLSPSQFRLMSDLQCDTVKEENEITEELAEWQETASEMMSCEMDMTEKITELIPIIKKADDLRMRTLQGVVRLLSKQQAMEFLIASGELLFGIRSWGMTHDASIS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10473g00001 215 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 4 212 - -
Vium10473g00001 215 ProSiteProfiles DOG1 domain profile. 2 213 IPR025422 GO:0006351|GO:0043565
Vium10473g00001 215 Pfam Seed dormancy control 23 87 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10473g00001 Vium-Chr10473 18635 19878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10473g00001 9 195 bZIP Transcription Factor Family AT5G06960 25.641 1.75e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10473g00001 - - pvu:PHAVU_005G081900g 338.961