Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1045g00002 ATGGATTCTGATTTCTGGACCTCGCGTCTTGCCGCCGCTAAACGCCAATACACGCTTCAGCATCACCATCAGAATTCTCATTTAGATCGGTTGGGAATCGATGATTTTGATGTGGAAGAAGAGGTGCGACCCGATTTCCCTTGCCCCTATTGCTATGAAGACTTTGACATCGCGTCTTTGTGTTCTCATCTTGAAGACGAACATTCTTGCGAAGCCAGAGTCACGATTTGTCCTGTATGCTCTGTTAAAGTTGCAAGGGACATGTTAAGTCACATAACGCTGCAACACGGGCACTTATTCAAGGTACAGAGAAGACGCAGGTTAAGAAGAGTTGCTATTCCAAACAGTCAGACACTGTCTCTCTTGGGTCGAGATCTTCGTGAGGCTCATCTACAGGTGCTTCTTGGTGGTGCTGGCGGAGGATACCGGTCAAACAGTGCAGCAGTGTCTAATGTTGCTACTGATCCCTTTCTATCCTCATTTATTTTGAATTTCCCAGCCTGTGAAGCAGAAGAGATTTCAAAATCTGTGGTGACAACTGCTGAGGATTCTTCTGCAAAAAATGTGACACCTGAACATATTTGGAAGTCAAGTTTTGATCCCTCCTTGAGCAGCGAAGAGCGGGAGAAAAGGATGAGACAAGCTGCTGGGAGATCTGGTTTTGTGCAGGACTTGTTTCTTTCAACTTTGTTAGGCGACTAA 702 0.4573 MDSDFWTSRLAAAKRQYTLQHHHQNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIASLCSHLEDEHSCEARVTICPVCSVKVARDMLSHITLQHGHLFKVQRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLGGAGGGYRSNSAAVSNVATDPFLSSFILNFPACEAEEISKSVVTTAEDSSAKNVTPEHIWKSSFDPSLSSEEREKRMRQAAGRSGFVQDLFLSTLLGD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1045g00002 233 Pfam Drought induced 19 protein (Di19), zinc-binding 45 97 IPR008598 -
Vium1045g00002 233 SUPERFAMILY TRAF domain-like 46 123 - -
Vium1045g00002 233 PANTHER PROTEIN DEHYDRATION-INDUCED 19 32 231 IPR033347 -
Vium1045g00002 233 Pfam Stress-induced protein Di19, C-terminal 119 230 IPR027935 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1045g00002 Vium-Chr1045 639 5987 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1045g00002 Di19_C 6.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1045g00002 - - gmx:100792230 424.861