Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1045g00001 ATGGATTCTGATTTCTGGACCTCGCGTCTTGCCGCCGCTAAACGCCAATACACGCTTCAGCATCACCATCAGAATTCTCATTTAGATCGGTTGGGAATCGATGATTTTGATGTGGAAGAAGAGGTGCGACCCGATTTCCCTTGCCCCTATTGCTATGAAGACTTTGACATCGCGTCTTTGTGTTCTCATCTTGAAGACGAACATTCTTGCGAAGCCAGAGTCACGAGAAGACGCAGGTTAAGAAGAGTTGCTATTCCAAACAGTCAGACACTGTCTCTCTTGGGTCGAGATCTTCGTGAGGCTCATCTACAGGTGCTTCTTGGTGGTGCTGGCGGAGGATACCGGTCAAACAGTGCAGCAGTGTCTAATGTTGCTACTGATCCCTTTCTATCCTCATTTATTTTGAATTTCCCAGCCTGTGAAGCAGAAGAGATTTCAAAATCTGTGGTGACAACTGCTGAGGATTCTTCTGCAAAAAATGTGACACCTGAACATATTTGGAAGTCAAGTTTTGATCCCTCCTTGAGCAGCGAAGAGCGGGAGAAAAGGATGAGACAAGCTGCTGGGAGATCTGGTTTTGTGCAGGACTTGTTTCTTTCAACTTTGTTAGGCGACTAA 618 0.4612 MDSDFWTSRLAAAKRQYTLQHHHQNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIASLCSHLEDEHSCEARVTRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLGGAGGGYRSNSAAVSNVATDPFLSSFILNFPACEAEEISKSVVTTAEDSSAKNVTPEHIWKSSFDPSLSSEEREKRMRQAAGRSGFVQDLFLSTLLGD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1045g00001 205 PANTHER PROTEIN DEHYDRATION-INDUCED 19 32 203 IPR033347 -
Vium1045g00001 205 Pfam Drought induced 19 protein (Di19), zinc-binding 45 73 IPR008598 -
Vium1045g00001 205 Pfam Stress-induced protein Di19, C-terminal 91 202 IPR027935 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1045g00001 Vium-Chr1045 636 5987 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1045g00001 Di19_C 4.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1045g00001 - - gmx:100792230 362.073