Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10451g00004 ATGGCTGAATCATTTCTGTTCAGCATAGCAGAGTCACTCATAGAAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGATTGGTGGGTTTATACCACGATCTACGAGACCTTACAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCACCAACTCCGCGAATGGCTCACTCAACTTAAAATTGTCTTCTCCGAAGCTGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAACAAAGTGGTCAAAGCTCATGATAGCACCAAAGACAAGGTAAGTCACTTCCTCTCAACCTCTAATCCACTTGTTTTTCGTTGCAAGATGGCACGACAAATTAAACATATCAACAACAGACTAGACAAGGTTGCAGCGGATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGAAAACACGATAAAGAAAAGATAATAGAACTTTTGATGCAGCAGAATCCTAATGATGATGATACAATTCTATCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATGGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAGGCAACTAGTTATCAAAATCATCAATTCTGCCAATGATGTAGATGTTCCTCCTCACCAACAGAATTTGAACAAGATGGATCTGGAGCAACTGCAAAACCAATTGAAAAGAAAACTTTCCGGTAAAAAATTTCTTCTTGTTTTGGATGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGTGGAGCAGGAAGTAAAGTTGTAGTGACCACACGTAGTCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCCAAAGAAGAGTCATTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCCAAATTTGAGGACAGTGAATGGGAATATGTGAGTGACAGTGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCAATAGTTATAAAATGACTGCGCTTTGGGAGGCACATGGGCTCATTACACTACCAAAAACGAATAAAACACTTGAAGATGTGGCCAATANTAGTCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCCAAAGAAGAGTCATTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAAGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCCAAATTTGAGGACAGTGAATGGGAATATGTGAGTGACAGTGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCAATAGTTATAAAATGACTGCGCTTTGGGAGGCACATGGGCTCATTACACTACCAAAAACGAATAAAACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGAAAACTTCGGCACTTCTTACATTTTTAGAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCGACGGATGAGTGTCTACACGTGCGTTTCAACATTCAAAATATTCCAGAAAATGTTCGGCATCTGTCTTTTGCTGGAAACAGTTTGTTTGACAATTTAGTCATAAAAAAATCAGCAGCTGTGAGAACCGTACTGTTTCCAAATGGTGCAGTAGGTGCCAACGGAGAAGCTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACGTGGTTTGACATTAGAGACTTTGCCCCGTACCATTGCTAAGATGAAGCATTTGAGATATTTGGACATTAGCAAAAATCTCAACATTAAGAGACTCCCCGATTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGATAATTAGGGGATGCGTAGAGCTGGAAGTATTGCCCAAAGGATTAAGAAAATTAATCAGTCTCCGTTATTTGTTTTTTAGCACAAAGCAAATTGTTTTGCCTGTGAATGAGATCGCCAAATTGGGGTCGCTTGAATACTTGAGCATTGAATGGTGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAAAGTCTAAAATCATTGTCTCTGGATGGTCAAAACTTTCCTGAATTAGAAACATTGCTTGTTAAGAACTGCGGTAACTTGGACTTGGGACAGAGTAAGGGCCACCATAAAGAAGAAAGCCCGAAGCTGAAGCTAAAACTTGTATTATTTTTCGGTTTATCACAGATGGTGGCCCTGCCTAAATGGCTTCAGGAAGCTAGCAAATCCTTGCAGCGCTTGTATGTTTTAAATTGTGACAATATTGAAAGACTTCCATATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGATTTAATAAATTGTCCAAATCTGGTATCTCTGCCAGATAACATTCATCACCTCACTGCACTTGAAAGTTTGAGAATTAGAGGTTGTCCTAACTTACATAAAATATATGAACCAATGTTGGAGGGTTTTGGCCCAAAATATCACACATCAAAGACATTGTGA 3036 0.3913 MAESFLFSIAESLIEKLASHAFQEASRLVGLYHDLRDLTKTLSLVKAVLLDAQQKQDHNHQLREWLTQLKIVFSEAEDVLDEFECQTLRNKVVKAHDSTKDKVSHFLSTSNPLVFRCKMARQIKHINNRLDKVAADRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPNDDDTILSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPWKMWVCVSDDFDIRQLVIKIINSANDVDVPPHQQNLNKMDLEQLQNQLKRKLSGKKFLLVLDDVWNEDRVKWVELRNLIQVSGAGSKVVVTTRSHSIASMMGTVPSHILEGLSKEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWEYVSDSEIWNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYLFNSYKMTALWEAHGLITLPKTNKTLEDVANXSHSIASMMGTVPSHILEGLSKEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWEYVSDSEIWNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYLFNSYKMTALWEAHGLITLPKTNKTLEDVANQYLHELLSRSFLQDFENFGTSYIFRIHDLVHDLALFVATDECLHVRFNIQNIPENVRHLSFAGNSLFDNLVIKKSAAVRTVLFPNGAVGANGEAILNTCLSKFKCLRVLDLRGLTLETLPRTIAKMKHLRYLDISKNLNIKRLPDSICKLQSLQVLIIRGCVELEVLPKGLRKLISLRYLFFSTKQIVLPVNEIAKLGSLEYLSIEWCHNVESIFGGVKFPSLKTLCVGDCQSLKSLSLDGQNFPELETLLVKNCGNLDLGQSKGHHKEESPKLKLKLVLFFGLSQMVALPKWLQEASKSLQRLYVLNCDNIERLPYWLTTLTDLKALDLINCPNLVSLPDNIHHLTALESLRIRGCPNLHKIYEPMLEGFGPKYHTSKTL 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10451g00004 1011 Pfam NB-ARC domain 475 579 IPR002182 GO:0043531
Vium10451g00004 1011 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vium10451g00004 1011 SUPERFAMILY L domain-like 655 992 - -
Vium10451g00004 1011 Gene3D - 149 330 IPR027417 -
Vium10451g00004 1011 Gene3D - 335 419 IPR042197 -
Vium10451g00004 1011 Gene3D - 492 576 IPR042197 -
Vium10451g00004 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 591 IPR027417 -
Vium10451g00004 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 434 IPR027417 -
Vium10451g00004 1011 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vium10451g00004 1011 Gene3D - 420 479 IPR036388 -
Vium10451g00004 1011 Gene3D - 577 665 IPR036388 -
Vium10451g00004 1011 PRINTS Disease resistance protein signature 195 210 - -
Vium10451g00004 1011 PRINTS Disease resistance protein signature 950 966 - -
Vium10451g00004 1011 PRINTS Disease resistance protein signature 372 386 - -
Vium10451g00004 1011 PRINTS Disease resistance protein signature 275 289 - -
Vium10451g00004 1011 PANTHER DISEASE RESISTANCE PROTEIN RP 473 984 IPR044974 GO:0006952
Vium10451g00004 1011 Gene3D Ribonuclease Inhibitor 676 901 IPR032675 -
Vium10451g00004 1011 Gene3D Ribonuclease Inhibitor 902 999 IPR032675 -
Vium10451g00004 1011 Gene3D - 10 124 - -
Vium10451g00004 1011 Pfam Leucine rich repeat 736 791 IPR001611 GO:0005515
Vium10451g00004 1011 FunFam Probable disease resistance protein At1g61300 149 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10451g00004 Vium-Chr10451 50885 54372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10451g00004 736 833 WRKY Transcription Factor Family AT4G12020 31.633 4.31e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10451g00004 - - vum:124819798 1993.01