Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10451g00001 ATGGCGGAATCATTTCTCTTCAGCATCGCAGACTCACTCGTTGCAAAACTTGCTTCTGATGCTTTTCAAGAAGCTTTTCGATTGGTAGGTTTGTACGACAATCTCCGACACTTTAGAAAGACTCTCTCTTTAGTTAAGGCTGTTCTGTTAGATGCTCAACAAAAGCAAGATCACAATCATGAGCTGCGAGAATGGCTCACTCAACTCAAAAATATCTTCTTGGATGCCGAAGATGTTTTGGATGAATTCGAGTGTGAAACACTACGAAATAAAGTGGTCAAAGGTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCAACCTCTAATCCACTTCTTTTTCGTTACCAAATGGTTCAACAAATTAAAGATATCAGCAACAGACTAGACAAGATTGCATCTGATAGGCATAAGTTTATTCTTCAAATAGTTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACATATTCCCGTGTGAGTGATTCAGATGTGATAGGAAGGAAAAACGACAAACAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTATCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAGACTACCCTTGCAATGTTTGTATTCAATGATAACAAGATCCGGGAGTGCTTCCCATTGAGAATGTGGGTTTGTGTTTCTGACGAATTTGATATCAAGCAACTGATAATCAAAATCATCAATTCTGCCAGTGATCTAGCTTCTGCAGATGCTCCTTCTCGACAACACAAATGGAAGACGTTGGATCTGGAGCAATTGCAAAATCAACTCACAAACAAACTTTTCGGTCAAAAGTTTCTACTTGTCTTGGATGACGTATGGAACGAAAACCGTGTTAAATGGGTTGATCTGAGGAATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAATTCTTGTGACCACACGTAGTCATTCAATTGCTTCCATGATGGGCACACTGCCCTCTCACAATTTAGAAGGTCTTTCTGAGGAGGACTCATTGTCTCTATTTGTCAAGTGGGCATTTAAAGAAGGAGAAGAGGAAAAACATCCTCACTTAATAAACATTGGGAGACAAATTGTGAAAAAATGCAGAGGGGTTCCTTTGGCTGTGAGAACACTAGGTTGTTTACTATTCTCGAAATTTGAGGCTAGTGAATGGGAATATGTGAGTCATAATGAAATTTGGAATTTGCCTCAGAAAAATGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTTTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATGTATTCAATAGTTATGAAATGACTTCGCTTTGGGGGGCACTTGGACTCATTGCATTACCAGAAAAGAACAGGACACTTGAATATGTGACCAATCAATATTTGGATGAACTTCAGTCAAGATCTTTTCTTCAAGATTTTGTAAAGTTTGGCACTACTTATAAATTTAGAATACATGATTTGGTGCATGATCTCGCTCTCTTTGTTTCAAAGGATGAGTGTGTACATTTAAGTTCCAACATCAAATATATTCCAGATAATGTTCGGCATCTATCTTTTGCTGAAAGCAGTTTGTTTGGTAATTTATTCACCAAAAAATTGGTAGCTTTGAGAACCATACTGTTTCCAGAGGTATTCAACACTTGTCTGTCAAAGTTCAAATACTTGCGAGTTTTGGATTTACGGTCTTCGACAATTGAGACTTTGCCCCGTAACTTTTCTAAGTTGAAACATCTGAGATATTTGGACTTAGGCTACAATGACAACATTAAGAGACTCCCTGAGTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTAAAGCTTGACGGATGCATGGAGCTTGAAGCATTGCCCAAAAAATTAAGGAAACTGATCAGTCTTCGTTATTTTAACTTTAGCACAACGCAATCTGTTTTTCCTAACAAGGAGATTGCCAGTTTGGGCTCGCTTGAAATAATGTCCATTAAATCATGCCATAATGTGGAGTCCATCTTCGGAGGGGTGAAATTCCCTGCTCTTAAAACATTGAATGTTTTCGACTGTCCGAGTCTAAAGTCTTTGTCGCTGGATAGTCAAAATTTTCCTCAATTAGAAACATTTTTTGTTGGTGGCTGCGGTAATTTGGACTTGCAACTGTGGAAGAGCCACCATGAAAAAGAAAGCCCCAAGCTGAAGTTAAAAGTTGTTGCATTTTCAAGATTATCACAGTTGGTGGCCTTGCCTGAATGGCTTCAGGAAGCTGCCAACTCCTTACAGTACTTGCTTGTTTTAGATTGCCCCAATATTGAAACTTTTCCAGAGTGGCTGTCAACTCTGACTGGTCTGAAAGCACTTCGTTTAATAGATTGCCCAAATTTGATATCTCTCCCTGATAACATCGACCACCTCACTGCACTTGAAAGTTTGAAAATTGGAAGTTGTCCTAAGTTATGTAAAAAGTATCAACCCCATGTTGGGGAGCTTTGGTCCAAAATATCACACATAAAAAACGTTATGATTGATGAACTAGAGGAGCCTGAAGAATTATAG 2580 0.388 MAESFLFSIADSLVAKLASDAFQEAFRLVGLYDNLRHFRKTLSLVKAVLLDAQQKQDHNHELREWLTQLKNIFLDAEDVLDEFECETLRNKVVKGHGSTKDKVSHFFSTSNPLLFRYQMVQQIKDISNRLDKIASDRHKFILQIVDVDTRVVHRRDMTYSRVSDSDVIGRKNDKQKIIELLMQQNPNDDDTSLSVIPIVGIGGLGKTTLAMFVFNDNKIRECFPLRMWVCVSDEFDIKQLIIKIINSASDLASADAPSRQHKWKTLDLEQLQNQLTNKLFGQKFLLVLDDVWNENRVKWVDLRNLIQVSAAGSKILVTTRSHSIASMMGTLPSHNLEGLSEEDSLSLFVKWAFKEGEEEKHPHLINIGRQIVKKCRGVPLAVRTLGCLLFSKFEASEWEYVSHNEIWNLPQKNDDILPALKLSYDLLPSYLRQCFALFSLYPKDYVFNSYEMTSLWGALGLIALPEKNRTLEYVTNQYLDELQSRSFLQDFVKFGTTYKFRIHDLVHDLALFVSKDECVHLSSNIKYIPDNVRHLSFAESSLFGNLFTKKLVALRTILFPEVFNTCLSKFKYLRVLDLRSSTIETLPRNFSKLKHLRYLDLGYNDNIKRLPESICKLQSLQVLKLDGCMELEALPKKLRKLISLRYFNFSTTQSVFPNKEIASLGSLEIMSIKSCHNVESIFGGVKFPALKTLNVFDCPSLKSLSLDSQNFPQLETFFVGGCGNLDLQLWKSHHEKESPKLKLKVVAFSRLSQLVALPEWLQEAANSLQYLLVLDCPNIETFPEWLSTLTGLKALRLIDCPNLISLPDNIDHLTALESLKIGSCPKLCKKYQPHVGELWSKISHIKNVMIDELEEPEEL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10451g00001 859 Gene3D - 150 331 IPR027417 -
Vium10451g00001 859 PANTHER DISEASE RESISTANCE PROTEIN RP 62 821 IPR044974 GO:0006952
Vium10451g00001 859 Gene3D - 10 124 - -
Vium10451g00001 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 437 IPR027417 -
Vium10451g00001 859 Gene3D - 338 422 IPR042197 -
Vium10451g00001 859 PRINTS Disease resistance protein signature 375 389 - -
Vium10451g00001 859 PRINTS Disease resistance protein signature 615 631 - -
Vium10451g00001 859 PRINTS Disease resistance protein signature 195 210 - -
Vium10451g00001 859 PRINTS Disease resistance protein signature 278 292 - -
Vium10451g00001 859 Gene3D - 423 511 IPR036388 -
Vium10451g00001 859 Gene3D Ribonuclease Inhibitor 515 738 IPR032675 -
Vium10451g00001 859 Gene3D Ribonuclease Inhibitor 739 847 IPR032675 -
Vium10451g00001 859 Pfam Leucine rich repeat 572 628 IPR001611 GO:0005515
Vium10451g00001 859 SUPERFAMILY L domain-like 501 850 - -
Vium10451g00001 859 Pfam NB-ARC domain 171 425 IPR002182 GO:0043531
Vium10451g00001 859 Coils Coil 66 86 - -
Vium10451g00001 859 FunFam Probable disease resistance protein At1g61300 149 332 - -
Vium10451g00001 859 Pfam Rx N-terminal domain 12 98 IPR041118 -
Vium10451g00001 859 CDD RX-CC_like 2 135 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10451g00001 Vium-Chr10451 6752 9459 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10451g00001 178 813 WRKY Transcription Factor Family AT5G45050 21.408 2.76e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10451g00001 - - gmx:100777049 1191.79