Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1044g00001 ATGTGGATGAGTTTCTACTTTGCTGTTTTAGCTGTTCTACTTATTCGAGCTCGTGCTCAACCAGGATTCATCAGCATAGATTGCGGAGCTGAAGCAGGTGTGAACTATACTGATTCAGTATATGGCATAAATTACGTTTCGGATGCAGATTTCATAAATACCGGTGTGAGTCAGACAATAGCATATGAAGAGATGAGCAAAGAAAGTAGTCGACAACTGTGGAGGCTGAGAAGCTTCCCGGAAGGAGAAAGGAACTGTTACAAAATAAGCGTCACAAGAGCCTCTAAGTATCTCATCCGCACTACTTTTCTGTACGGAAATTATGATGGCCGAAATATGTTACCACAGTTTGATCTTCTTCTCGGACCTAACCACTGGGATACAGTCACTATAAACGATGAATCAGGGCAATACCACAAGGAGATCATACATGTACCTTCAATGGATTATGTGCAAATCTGTCTGGTTGACACAGGCAATGGCACACCATTTATAACAGCCATAGAATTCAGGACTTTGAATAATGATACATACGTCACTCAATTCGGATCATTGCAACTTTACAATTACCTGCGCTGCGATTTGGGTTCAAACACAATCCACAGGTACCCGGTTGATGTTTATGATCGTTACTGGTATAGTCGTTCTTCCTGGAACGCCTGTAACTTCCGCGAAAATTGGAAACCACTAAGTCCCTCCATTTCCGATTATTCTTTAAATGAGAATGATTACAAGCCGGGAGCGACTATCATGAGCACCGCAGTTGAACCAGAAAATGATAGTGCTCCTTTGGTAATAAGATGGGAGCCACAACAAGAAACTGATCAATTCTATGTGTACATGCACTTCACGGAAATTCAAGTGTTAACCACCAATCAGACAAGACAATTCAACATCATGAACGGTGAATCATGGTTTCAAGAGTGTTCTCCAGAGTATCATGGAATGAATACTATATATTCGATATCAGGCACCAGTGGGAAAGAAATTAAATTTTCCCTCGAGAGGACTAAAAATTCAACCCTCCCTCCCATCATCAGTGCCATTGAAATTTACAGTGTAATAAACTTACAGAAACCAGAAACATTCCAAGGAGATGTTGATGCGCTTACAAGCATCAAATCAGTTTATGGAGTGAAAAGGGATTGGGAAGGTGATCCATGCTCCCCTGCAGCCTACTTGTGGGATGGTCTCAACTGTACTTCTCTCGGCAATGAGTTTCCAAGAATCACAGCTTTGAATTTATCGTCAAGTGGATTGTCAGGAAATATTGACCCTTCCATCTCAAACCTCACCATGTTGGAGAAACTGGATTTATCTAACAATAGCTTAAATGGTGAAGTTCCTGATTTTCTGTCTCAATTACAACACTTGAAGATCTTAAACTTGGAGAAGAATGACCTCTCCGGTTCAATTCCTTCTGCACTTGTTGAAAAATCACGCGAAGGTTCTCTCTCATTAAGTGTGGGTGAAAATCCATATCTATGTGAATCTGATCAATGCAACGAGAAGGAAAAGAAAAATACTGTCACACCCATAGTAGCATCAATATGTGGGGTTCTAATTCTTCTAATAGCCGTTGCTGTATTGTGGATCCTTAAAAGGAAAAAATCAAAAGTTGAAAAATTTACAGATTCGGTGGCAGTAAATCATCAGAGTGAGATTTCACAGCAATCCACAGAAAAGGATAATTCGTTCCAGCAAGGCAAAAGTCAAATGTATTCATACAATGATGTCCTTCAAATCACAAACAATTTCAATAGAATTATTGGTAAAGGAGGATTTGGAACAGTGTACCTGGGCTTTATCGATGAGACTCCAGTTGCAGTGAAAATGCTTTCCCCATCAGCAGTTCATGGTTATCAACAATTTCAAGCAGAAGTTAAACTTCTACTCAGAGTTCATCACAAAAATTTGACATCCCTTATTGGTTACTGTAACGAAGGAACCAATAAGGGCCTTATATATGAGTACATGGCTAAAGGGAACTTACGACAACATCTCTCAGGTAAATACAGCGAATCACCATTCTTGAGATGGAAGGACAGACTTCGTGTTGCAGTGGATGCAGCCTTAGGATTGGAATATCTGCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGATGTGAAATCTACAAACATCTTGTTGGACGAACACTTCCAAGCAAAGTTATCTGATTTCGGTCTATCCAAAATTGTCCCAGATGATGGGGGGTCTTATGTGTCAACTGTTGTTGCTGGAACTTTCGGTTACCTGGATCCTCACTACCACTCTTCCAATAGGTTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAATCAACCAGTAATGGCAGGGAATGAAGAAACTGGTCACATAAGTGAACGAGTTAACGTGATGATATCAAAAGGAGATATCAGAGCCATAGTTGACTCAAGCTTAGAAGGAAATTTTGACATAAACTCAGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCCAACGAAAGGCCAATGATGAGTGTGGTAGTGATTGAACTACAAGAGGCTTTAGCGACCGAATTAGCTAGAACAAACCATGACAGTGGTGATGATCCCAGGTATTCTGTTGCATCAGTCAGCGTGAAAGTAGACACCGAATATAAGCCCTTAGCTAGGTAA 2679 0.4035 MWMSFYFAVLAVLLIRARAQPGFISIDCGAEAGVNYTDSVYGINYVSDADFINTGVSQTIAYEEMSKESSRQLWRLRSFPEGERNCYKISVTRASKYLIRTTFLYGNYDGRNMLPQFDLLLGPNHWDTVTINDESGQYHKEIIHVPSMDYVQICLVDTGNGTPFITAIEFRTLNNDTYVTQFGSLQLYNYLRCDLGSNTIHRYPVDVYDRYWYSRSSWNACNFRENWKPLSPSISDYSLNENDYKPGATIMSTAVEPENDSAPLVIRWEPQQETDQFYVYMHFTEIQVLTTNQTRQFNIMNGESWFQECSPEYHGMNTIYSISGTSGKEIKFSLERTKNSTLPPIISAIEIYSVINLQKPETFQGDVDALTSIKSVYGVKRDWEGDPCSPAAYLWDGLNCTSLGNEFPRITALNLSSSGLSGNIDPSISNLTMLEKLDLSNNSLNGEVPDFLSQLQHLKILNLEKNDLSGSIPSALVEKSREGSLSLSVGENPYLCESDQCNEKEKKNTVTPIVASICGVLILLIAVAVLWILKRKKSKVEKFTDSVAVNHQSEISQQSTEKDNSFQQGKSQMYSYNDVLQITNNFNRIIGKGGFGTVYLGFIDETPVAVKMLSPSAVHGYQQFQAEVKLLLRVHHKNLTSLIGYCNEGTNKGLIYEYMAKGNLRQHLSGKYSESPFLRWKDRLRVAVDAALGLEYLQTGCKPPIIHRDVKSTNILLDEHFQAKLSDFGLSKIVPDDGGSYVSTVVAGTFGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQPVMAGNEETGHISERVNVMISKGDIRAIVDSSLEGNFDINSAWKAVEIAMACVSPNPNERPMMSVVVIELQEALATELARTNHDSGDDPRYSVASVSVKVDTEYKPLAR 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1044g00001 892 Gene3D Transferase(Phosphotransferase) domain 1 659 878 - -
Vium1044g00001 892 Pfam Protein tyrosine and serine/threonine kinase 586 851 IPR001245 GO:0004672|GO:0006468
Vium1044g00001 892 FunFam Leucine-rich repeat receptor-like protein kinase 556 658 - -
Vium1044g00001 892 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 659 866 - -
Vium1044g00001 892 FunFam Leucine-rich repeat receptor-like kinase 365 498 - -
Vium1044g00001 892 PANTHER OS07G0107800 PROTEIN-RELATED 24 857 - -
Vium1044g00001 892 ProSiteProfiles Protein kinase domain profile. 584 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1044g00001 892 SMART serkin_6 584 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1044g00001 892 ProSitePatterns Protein kinases ATP-binding region signature. 590 611 IPR017441 GO:0005524
Vium1044g00001 892 SUPERFAMILY Protein kinase-like (PK-like) 566 851 IPR011009 -
Vium1044g00001 892 Pfam Malectin-like domain 26 354 IPR024788 -
Vium1044g00001 892 Gene3D Ribonuclease Inhibitor 367 487 IPR032675 -
Vium1044g00001 892 CDD STKc_IRAK 590 855 - -
Vium1044g00001 892 Gene3D Phosphorylase Kinase; domain 1 555 658 - -
Vium1044g00001 892 SUPERFAMILY L domain-like 369 477 - -
Vium1044g00001 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1044g00001 Vium-Chr1044 12274 17924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1044g00001 11 892 Receptor kinase-like Gene Family AT1G51800 48.058 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium1044g00001 Malectin_like 2.8e-107 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1044g00001 - - vum:124830965 1292.72