Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10436g00001 ATGTCTTCCATGGCCTCCACCAACCGAGACGAATCCTCCGACAACGACAGCAACTGTTCCTCGCTAACCGCACCGGACTCCTCTCGCAGCTGGCTCAGCACCTTTAGCTTCCGCCGCGCCAACCGCACCTCCCTTTCCCTTTCCACCGCCGAGACCACCTCAAGGGCTGCATGCGAGGCCATTCGCCGCCTCCGCCTCCACACCGGCGCCATCGGCCTCGACCACTTCCGTCTGCTGCGGCGGCTCGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAACCCGGTGATGGGGTTGCCGCAGTGCCTCTACGCCATGAAGGTGGTGGATAGAGAGGCGCTTGCCATACGGAAGAAGCTTCACCGAGCGGAGATGGAGAAGGAGATTCTGGCCATGATGGACCACCCCTTCTTGCCTACTCTATACGCTGCGTTTGATGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGTGGAGACCTGTTCTCCGATCGCCAACGCCTCCCCGAAAAACGCTTTACCATCTCGTCAACTAAGTTTTATGCAGCGGAGACACTGGTGGCACTGGAGTATCTGCACATGAAGGGCATAGTGTACAGGGACTTGAAGCCGGAGAACGTGCTGGTGAGGGAGGACGGTCACATTATGCTATCGGATTTTGATCTGTGTCTGAGATGCGAGGTGGTTCCAAAGCTGTTGAGAAGCAAAACCAGATCAGAAGGCAGTGCGAAGACAAGAACATCATCATGTGCTGCACCCATGCAATCATGTTTCTCTGGCTCAAGCAAGAGAAAGAAGAAGGTGACAACAGTTATAAGGGAAAATGTGGAGGTGTGTGAGGTCGACACAGAGATGGTGGCAGAGCCCATCGATGCAAGGTCCAAGTCATTTGTGGGAACGCATGAGTACTTGGCACCCGAAGTGATTTCTGGGCAAGGACATGGTAGTGCAGTGGATTGGTGGACTTATGGGGTTTTCTTGTATGAAATGTTGTATGGGAAAACACCCTTCAAAGGTGAGAACAACGAGAAAACACTGACCAACATTCTGAAGCAGCCCTTCACTTTCCCTAGAATTGCAGTGAGTAGCAGCAGGGAGTATGAAGAGACGGCGAAGGTTCAAGACCTCATCAGCAAGCTCTTGGTGAAGAACCCAAAGAAGAGAATCGGGTGCTGCATGGGCTCGGTTGAGATCAAGCGGCACGAGTTCTTCAAGGGAGTCAACTGGGCTCTGATTAGATCAGTTAAACCACCTGATTTCCACGCTGATTTCAACAACATTAGGCGTAGAGTTTTGTTACAGAAACTAAGCAACAAAGACAAGGATCAACCCTTTCAGATCACTCACCATCGTTTTGACTACTTCTGA 1383 0.5249 MSSMASTNRDESSDNDSNCSSLTAPDSSRSWLSTFSFRRANRTSLSLSTAETTSRAACEAIRRLRLHTGAIGLDHFRLLRRLGSGDIGNVYLCQIRNPVMGLPQCLYAMKVVDREALAIRKKLHRAEMEKEILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGDLFSDRQRLPEKRFTISSTKFYAAETLVALEYLHMKGIVYRDLKPENVLVREDGHIMLSDFDLCLRCEVVPKLLRSKTRSEGSAKTRTSSCAAPMQSCFSGSSKRKKKVTTVIRENVEVCEVDTEMVAEPIDARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGVFLYEMLYGKTPFKGENNEKTLTNILKQPFTFPRIAVSSSREYEETAKVQDLISKLLVKNPKKRIGCCMGSVEIKRHEFFKGVNWALIRSVKPPDFHADFNNIRRRVLLQKLSNKDKDQPFQITHHRFDYF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10436g00001 460 SMART serkin_6 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10436g00001 460 CDD STKc_phototropin_like 74 423 - -
Vium10436g00001 460 MobiDBLite consensus disorder prediction 1 28 - -
Vium10436g00001 460 PANTHER FLIPPASE KINASE 1-RELATED 13 427 - -
Vium10436g00001 460 FunFam serine/threonine-protein kinase D6PK-like 297 427 - -
Vium10436g00001 460 Pfam Protein kinase domain 299 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10436g00001 460 Pfam Protein kinase domain 77 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10436g00001 460 FunFam protein kinase PINOID 2 74 160 - -
Vium10436g00001 460 Gene3D Transferase(Phosphotransferase) domain 1 284 423 - -
Vium10436g00001 460 Gene3D Phosphorylase Kinase; domain 1 74 160 - -
Vium10436g00001 460 SUPERFAMILY Protein kinase-like (PK-like) 61 429 IPR011009 -
Vium10436g00001 460 ProSiteProfiles Protein kinase domain profile. 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10436g00001 460 FunFam Serine/threonine-protein kinase OXI1 165 233 - -
Vium10436g00001 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vium10436g00001 460 Gene3D Transferase(Phosphotransferase) domain 1 161 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10436g00001 Vium-Chr10436 2456 4465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10436g00001 14 460 AGC Kinase Gene Family AT2G26700 54.598 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium10436g00001 Pkinase 7.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10436g00001 K08286 - gmx:100787216 716.457