Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10434g00002 ATGAAAGTGGTCGAAGTTCTGAGCATAGCACCGAGCTCTGAATCAAAAGAGCTACCGACAGAGGCATCTTTCGCCCTCACCTTCTTCGACATATTATGGCTAAGGTTACCCCCTGTTCAACGTGTCTTCTTCTACGAATTTCATCATCCGACTGATGTTTTTTTTGATACCCTTCTTCCCAAACTCAAACGCTCTCTCTCTCTTGCACTTGGCCACTTTTTCCCTCTTGCTGGACACCTCACTTGGCCCACTCATTCCACCAAACCCCTCATCGTTTACAACCAAGGTGATACTCTTTCATTCACTGTAGCTGAATCTGACGCCGATTTCAACCATCTTGCAGGCACAGATTTCACCGAAGCTACAGAAACTCACCCTTTTGTACCTCCCTTGAACATATCCCACGAACAAACTACGCTTTTTGCCCTGCAAGTTACTCTCTTTCCGAACGCTGGATTTGCCATTGGAATAACCTCCCACCATGCTGTTCTTGATGGCAAAGCTTCAACAACATTTGTCAAATCGTGGGCATATCTCTGCAGAGAAGCACAACCACCCTTTTCTTTGCCAGCGGAATGGACTCCTTTCTTTGATAGGGAAATAGTGAACGACCCCAAAAAAATAGGAGAAAAGTATTCCCTTGATTGGTTAAAGATGGGTGGACCCAACAACAGAAGCCTCAAGGTTAGCGAGATGCCTGTTCCAGAAGAAGCGACCAGAGGCTTGTTTCATTTGTCTAGCTCAGGTATTGAAAAGCTGAAGCAGATTGTGCAGAGTAAAGAGAATAACACGAACCTTCACTTGTCAACTTTTGTGCTAGCTGCCGCCTATTCGATGGTATGCAGAGTGAAAGCAGAAGGTGGCCAAAGTACAAGTACTGGTTTCGGTCTGAATGTTGATTGCAGGCGTCAGATGGAGCCGCCTGTTCCTCCAACGTATTTAGGGAACTGTGTTGGTATCACAGTCGCAATTACTGAAACAAAAGACTTGTTGGGGGAGGATGGACTTATCGTGGCTGTGAAAGCACTGAGTGAAGCTTTGGGAACATTGAAGAAGGAAGGTTTTCTGCATGAAGCAGAAGACTGGTGGAAGATGGTGTATGAAAGTTACAAAGTCGGTGACACAAAAACAGCTGCTTTTGCAGGGTCACCGAGGTTTGAAATTTACAGTAGTGATTTTGGTTGGGGAAAACCAACGAAGGTGGAGATGGTGTCTATTGACAGAACTGCAGCGTTTTGTTTTTCAGATAGCAGAACAGGTGACGGAATTGAAATAGGTTTCGTGACCAAGAAAAAAGCTATGGAGACCTTTGCTTCTCTCTTTGAAGAAGGCCTTCAATCTTGA 1344 0.4509 MKVVEVLSIAPSSESKELPTEASFALTFFDILWLRLPPVQRVFFYEFHHPTDVFFDTLLPKLKRSLSLALGHFFPLAGHLTWPTHSTKPLIVYNQGDTLSFTVAESDADFNHLAGTDFTEATETHPFVPPLNISHEQTTLFALQVTLFPNAGFAIGITSHHAVLDGKASTTFVKSWAYLCREAQPPFSLPAEWTPFFDREIVNDPKKIGEKYSLDWLKMGGPNNRSLKVSEMPVPEEATRGLFHLSSSGIEKLKQIVQSKENNTNLHLSTFVLAAAYSMVCRVKAEGGQSTSTGFGLNVDCRRQMEPPVPPTYLGNCVGITVAITETKDLLGEDGLIVAVKALSEALGTLKKEGFLHEAEDWWKMVYESYKVGDTKTAAFAGSPRFEIYSSDFGWGKPTKVEMVSIDRTAAFCFSDSRTGDGIEIGFVTKKKAMETFASLFEEGLQS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10434g00002 447 Gene3D - 1 227 IPR023213 -
Vium10434g00002 447 SUPERFAMILY CoA-dependent acyltransferases 242 446 - -
Vium10434g00002 447 Pfam Transferase family 9 442 - -
Vium10434g00002 447 Gene3D - 234 447 IPR023213 -
Vium10434g00002 447 PANTHER - 2 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10434g00002 Vium-Chr10434 8240 9888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10434g00002 47 442 Monolignol Biosynthesis Gene Families AT5G48930 24.471 1.89e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10434g00002 - - gmx:100805184 622.854