Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10424g00001 ATGGGCAGAAAGCTTGGGAAGGGAGGGTTTGGACAAGTTTACGTAGGTAGGCGAGTTGGGGCTGGTGCCGGAGCGTTAGAGGTAGCTTTGAAGTTTGAACATAGAAGCAGTAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAAGTTTACAATGTATTGGGTGGTAGTCATGGTGTTCCACGTGTTCATTACAAGGGACGGCAAGGTGATTACTATGTTATGGTCATGGATATGCTTGGCCCTAGTCTGTGGGATGTCTGGAATAACAACTCAAACACAATGTCTGCGGAAATGGTGGCATGTATAGCAATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAAAGGGTATGTGCACGGTGATGTAAAACCTGAGAATTTTTTGCTTGGCACCCCTGGAACTGCTGATGAGAAAAAGCTTTTCCTAGTTGATCTTGGATTAGCAACCCGTTGGCGTGATTGTTCAACTGGCTTTCATGTTGAGTATGATCAACGTCCTGATGTATTTAGAGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTGGGTAGAACAGGAAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACATTGATTTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTGTGCAAGAAAAAGATGGCAACCTCACCAGAAGCTTTGTGTTGTGTCTGTCCTCCACCATTCCGGCAGTTTGTGGAATACGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCGAAGTATATATCACTTTTTGATGGAATTGTTGGACCGAATCCAGATATCAGACCCATAAATACCGAAGGTGCACAAAAGCTTATAAATCTGGTTGGACATAAGAGAGGACGATTAACTGTGGAAGAAGATGATGACGAACAACCAAAGAAGAGAGTGAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCCCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGGCTGTCCCAACACATTGAAAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCCTGTTGTTCTAACCTATGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCTCAAGTTCATGAACTCTCACCCCACTTCCTTCATAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATTAGTGCAATAGCAGGATCTAACAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAATACATGCAGCAATCCTATAAAGTTAGCGAGTCATTCCCATTTAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTCTGTCACTGCTATGGCTACTGCTGGGAGTAGATGGGCAATTGTAATGTCCCGTGGTGCTGGATATTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGCATTCATCGCAGGTGGGACAATGGTTACCGCATCACTTCAACTGCTGCCACCTGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCGGCTGATGAAACTCAAGAGACACTCCGCACATCTGCCTTTCCTAGTAGTCACGTCAAGGAAAAATGGTCAAAAAATCTCTATATTGCATCAATATGCCATGGGAGAACAGTTTCATGA 1680 0.4363 MGRKLGKGGFGQVYVGRRVGAGAGALEVALKFEHRSSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSNTMSAEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTADEKKLFLVDLGLATRWRDCSTGFHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCVCPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLINLVGHKRGRLTVEEDDDEQPKKRVRMGMPAMQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVHELSPHFLHKEWIMEQWENNYYISAIAGSNNGSSLVVMSKGTQYMQQSYKVSESFPFKWINKKWREGFSVTAMATAGSRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSSHVKEKWSKNLYIASICHGRTVS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10424g00001 559 FunFam casein kinase 1-like protein HD16 1 315 - -
Vium10424g00001 559 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10424g00001 559 CDD STKc_CK1 2 268 - -
Vium10424g00001 559 SUPERFAMILY Protein kinase-like (PK-like) 2 272 IPR011009 -
Vium10424g00001 559 Gene3D Transferase(Phosphotransferase) domain 1 1 299 - -
Vium10424g00001 559 Pfam Protein kinase domain 3 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10424g00001 559 SMART serkin_6 1 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10424g00001 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vium10424g00001 559 ProSitePatterns Protein kinases ATP-binding region signature. 5 31 IPR017441 GO:0005524
Vium10424g00001 559 PANTHER CASEIN KINASE-RELATED 4 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10424g00001 Vium-Chr10424 17112 22079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10424g00001 1 268 MAP Kinase Kinase Kinase AT5G50180 24.739 1.07e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vium10424g00001 Pkinase 2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10424g00001 - - vvi:100254265 1069.68