Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1041g00003 ATGGCGGAGGTGAAGGAAGAGAGTAAATCGAGTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTGCCGAAGCGCATGACGGAGGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCGTTGGTTGACGAGGTCAACATCATCAGAGACAAAGTTTCTCGTGCCTCCCGAGGATGCTGCTTTCTGATTTGTCCGTCCAGGGAAGAAGCAGATAAGGCGGTCAATGCCTGTCACAACAAGAAAACGCTGCCTGGGGCTTCCAGTCCGTTGCAAGTGAAGTATGCTGATGGCGAATTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAACATTTCTGAAGATGAGGTCTCGGATCTTTTCTCAAAGTATGGAGACATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGGTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCGTAGCTGCTCTTGAGGCAATCAATGGAAAGCATACAATGGAGGGTTCAGGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACAAGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAACATGCCTCATGCTGATCCTCAACAACCCTCATTATATGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGCAGTTATGGGCTCGTGCCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTTCATAATATGAACATGAACCAAGTAAATGCAGTGAGGCCTGAACTTGGTCACAGTATGAACCCTAGAAATTATCCTGCACCTCCTGCGAGTTACATGGGCTCATATCCTGCCATGCCAGGTGGGAATAGCAACTATTCATCTTCTGGTGCCAGTAAAAGTTCCAATGGTCAGATTGAAGGACCACCCGGTGCCAATTTATTTATTTATCACATTCCTCAAGAATATGGAGATGAAGAGCTTGCAAATGCATTTCAACAGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCGACTGGCGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAACGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTCAAGAGGGATAACAAACAGAGTAAGCTTTACTGA 1206 0.4395 MAEVKEESKSSSEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNIIRDKVSRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSKYGDIKDLQILRGSQQTSKGCAFLKYETKEQAVAALEAINGKHTMEGSGVPLVVKWADTEKERQARRAQKAQSQVSNMPHADPQQPSLYGALPMGYVPPYNGYGYQAPGSYGLVPYRFPPMQNQPGFHNMNMNQVNAVRPELGHSMNPRNYPAPPASYMGSYPAMPGGNSNYSSSGASKSSNGQIEGPPGANLFIYHIPQEYGDEELANAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKLY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1041g00003 401 Gene3D - 2 99 IPR012677 -
Vium1041g00003 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Vium1041g00003 401 SMART rrm1_1 105 180 IPR000504 GO:0003723
Vium1041g00003 401 SMART rrm1_1 317 390 IPR000504 GO:0003723
Vium1041g00003 401 SMART rrm1_1 17 93 IPR000504 GO:0003723
Vium1041g00003 401 MobiDBLite consensus disorder prediction 194 208 - -
Vium1041g00003 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 394 IPR000504 GO:0003723
Vium1041g00003 401 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Vium1041g00003 401 SUPERFAMILY RNA-binding domain, RBD 104 396 IPR035979 GO:0003676
Vium1041g00003 401 CDD RRM3_CELF1-6 318 390 - -
Vium1041g00003 401 CDD RRM1_2_CELF1-6_like 18 93 - -
Vium1041g00003 401 PANTHER RNA BINDING PROTEIN 15 396 - -
Vium1041g00003 401 Gene3D - 290 393 IPR012677 -
Vium1041g00003 401 Gene3D - 100 193 IPR012677 -
Vium1041g00003 401 MobiDBLite consensus disorder prediction 186 211 - -
Vium1041g00003 401 FunFam RNA-binding protein BRN1 2 100 - -
Vium1041g00003 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Vium1041g00003 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 388 IPR000504 GO:0003723
Vium1041g00003 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Vium1041g00003 401 FunFam RNA-binding protein BRN1 isoform X1 101 193 - -
Vium1041g00003 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Vium1041g00003 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Vium1041g00003 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Vium1041g00003 401 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Vium1041g00003 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Vium1041g00003 401 FunFam RNA-binding protein BRN1 285 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1041g00003 Vium-Chr1041 37319 42040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1041g00003 316 400 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 9.94e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1041g00003 K13207 - gmx:100796156 687.952