Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10419g00001 ATGGTTCACTCCTTCTATGAGAAAAGCTCTCCTTCTGGCTCTGATATTTCGGGGTTGTTCAATCCCACTTTGCAAAGTGTTGGAGCTTCCAATGGTGAAGTTGCGAAGGGTGGCTTGTCATCGTCACATTCTTTAGTTTATGAGAGTGAGAAGGGAGAGCTGGTGAAGTGCTCTTCAGCTGCAAAGGTAGGGAAGAATGAGATTTGTGAAGCCAAAGCTTTGGCTGCTTTGAAGAATCACAGTGAAGCAGAGAGAAGAAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTATTGGCTGAAGTGATAAAGCAAGTGAAGGAATTGAAAAAAACTGCAGTAGAAGCAAGCAAGGGTTTTCCAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGAAGGATCCATGTCTTACAGTGCAAATATTTGCTGTGATTTTCGACCTGAAATAATATCTGACCTAAGACAAACCCTTGATTCTCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGAAGAATGTATTCGTCTTCACATGTTGCAAAGGGAACATTGATATTCATACTGAAGCATGCCAAGCTCTTGCAAGAACTGTTCATCAGGCCCTGTGTTCTGTACTGGAAAAGGCTTCTGCCTCACTTGAGTTCTCACCCAGAACATCTCATGCTAACAAGAGGAGAAGACTGTGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTCGTGTTGA 807 0.4287 MVHSFYEKSSPSGSDISGLFNPTLQSVGASNGEVAKGGLSSSHSLVYESEKGELVKCSSAAKVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIKQVKELKKTAVEASKGFPIPMDADEVKVEPCEGSMSYSANICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKGNIDIHTEACQALARTVHQALCSVLEKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCSC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10419g00001 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 128 IPR036638 GO:0046983
Vium10419g00001 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Vium10419g00001 268 PANTHER TRANSCRIPTION FACTOR BHLH30 35 255 IPR045847 GO:0003700|GO:0006355
Vium10419g00001 268 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Vium10419g00001 268 SMART finulus 81 130 IPR011598 GO:0046983
Vium10419g00001 268 Gene3D - 72 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10419g00001 Vium-Chr10419 6179 9741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10419g00001 72 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.476 9.00e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium10419g00001 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10419g00001 - - gmx:100804756 441.81