Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10415g00005 ATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGTGGGGGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCTCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAGAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACCTTAACAACCTCCGAAACACTTCCTTTATCGCATGATAAGCAAACTCATCCGCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCCCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGGAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAACAAAGATGAACATAAGGAGAGTGGACAGTAA 672 0.4241 MTVLWMPLHNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKQTHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFDLETNKDEHKESGQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10415g00005 223 Coils Coil 83 103 - -
Vium10415g00005 223 MobiDBLite consensus disorder prediction 137 223 - -
Vium10415g00005 223 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 47 IPR006447 GO:0003677
Vium10415g00005 223 Gene3D - 8 50 - -
Vium10415g00005 223 MobiDBLite consensus disorder prediction 52 69 - -
Vium10415g00005 223 SUPERFAMILY Homeodomain-like 18 46 IPR009057 -
Vium10415g00005 223 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 176 IPR044848 GO:0003700
Vium10415g00005 223 MobiDBLite consensus disorder prediction 52 82 - -
Vium10415g00005 223 MobiDBLite consensus disorder prediction 209 223 - -
Vium10415g00005 223 Pfam MYB-CC type transfactor, LHEQLE motif 80 126 IPR025756 -
Vium10415g00005 223 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10415g00005 Vium-Chr10415 41144 44345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10415g00005 27 198 G2-like Transcription Factor Family AT2G01060 51.705 1.91e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium10415g00005 Myb_CC_LHEQLE 6.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10415g00005 - - gmx:100787389 362.073