Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10415g00004 ATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGTGGGGGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCTCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAGAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACCTTAACAACCTCCGAAACACTTCCTTTATCGCATGATAAGCAAACTCATCCGCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCCCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGGAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAACAAAGATGAACATAAGGAGAGTGGACAGTAA 666 0.4249 MTVLWMPLHNLVDQIVGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKQTHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFDLETNKDEHKESGQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10415g00004 221 Coils Coil 81 101 - -
Vium10415g00004 221 MobiDBLite consensus disorder prediction 135 221 - -
Vium10415g00004 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 47 IPR006447 GO:0003677
Vium10415g00004 221 MobiDBLite consensus disorder prediction 52 80 - -
Vium10415g00004 221 Gene3D - 8 50 - -
Vium10415g00004 221 MobiDBLite consensus disorder prediction 52 67 - -
Vium10415g00004 221 Pfam MYB-CC type transfactor, LHEQLE motif 78 124 IPR025756 -
Vium10415g00004 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 174 IPR044848 GO:0003700
Vium10415g00004 221 MobiDBLite consensus disorder prediction 207 221 - -
Vium10415g00004 221 MobiDBLite consensus disorder prediction 163 189 - -
Vium10415g00004 221 SUPERFAMILY Homeodomain-like 18 46 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10415g00004 Vium-Chr10415 41144 44345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10415g00004 27 196 G2-like Transcription Factor Family AT2G01060 51.149 1.39e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium10415g00004 Myb_CC_LHEQLE 6.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10415g00004 - - gmx:100787389 367.081