Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10415g00003 ATGTACCACGCAAAGAAGTTTTCATCGGCTAGTATGGTGCCCTATAAATCTCAAGGTGGTGCTGAACAAATTGCAAATGTTGAGGTTTTGGGTGGATCTGCTGGAAAAAATGCCACACCGGCGGGAGGAAGTGGGAAACAGCGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGGGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCTCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAGAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACCTTAACAACCTCCGAAACACTTCCTTTATCGCATGATAAGCAAACTCATCCGCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCCCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGGAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAACAAAGATGAACATAAGGAGAGTGGACAGTAA 834 0.4305 MYHAKKFSSASMVPYKSQGGAEQIANVEVLGGSAGKNATPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKQTHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFDLETNKDEHKESGQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10415g00003 277 FunFam Myb family transcription factor 45 103 - -
Vium10415g00003 277 MobiDBLite consensus disorder prediction 191 277 - -
Vium10415g00003 277 Coils Coil 137 157 - -
Vium10415g00003 277 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vium10415g00003 277 MobiDBLite consensus disorder prediction 106 123 - -
Vium10415g00003 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Vium10415g00003 277 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
Vium10415g00003 277 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Vium10415g00003 277 Gene3D - 45 104 - -
Vium10415g00003 277 MobiDBLite consensus disorder prediction 219 245 - -
Vium10415g00003 277 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 44 230 IPR044848 GO:0003700
Vium10415g00003 277 MobiDBLite consensus disorder prediction 106 136 - -
Vium10415g00003 277 MobiDBLite consensus disorder prediction 263 277 - -
Vium10415g00003 277 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10415g00003 Vium-Chr10415 41144 45402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10415g00003 40 204 G2-like Transcription Factor Family AT3G13040 50.588 8.71e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium10415g00003 Myb_DNA-binding 2.7e-06 CL0123