Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10415g00002 ATGTACCACGCAAAGAAGTTTTCATCGGCTAGTATGGTGCCCTATAAATCTCAAGGTGGTGCTGAACAAATTGCAAATGTTGAGGTTTTGGGTGGATCTGCTGGAAAAAATGCCACACCGGCGGGAGGAAGTGGGAAACAGCGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGGGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCTCCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAGAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACCTTAACAACCTCCGAAACACTTCCTTTATCGCATGATAAGCAAACTCATCCGCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCCCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGGAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAACAAAGATGAACATAAGGAGAGTGGACAGTAA 828 0.4312 MYHAKKFSSASMVPYKSQGGAEQIANVEVLGGSAGKNATPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKQTHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFDLETNKDEHKESGQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10415g00002 275 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Vium10415g00002 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Vium10415g00002 275 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vium10415g00002 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 44 228 IPR044848 GO:0003700
Vium10415g00002 275 MobiDBLite consensus disorder prediction 217 243 - -
Vium10415g00002 275 Gene3D - 45 104 - -
Vium10415g00002 275 MobiDBLite consensus disorder prediction 261 275 - -
Vium10415g00002 275 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Vium10415g00002 275 MobiDBLite consensus disorder prediction 189 275 - -
Vium10415g00002 275 Coils Coil 135 155 - -
Vium10415g00002 275 MobiDBLite consensus disorder prediction 106 134 - -
Vium10415g00002 275 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Vium10415g00002 275 MobiDBLite consensus disorder prediction 106 121 - -
Vium10415g00002 275 FunFam Myb family transcription factor 45 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10415g00002 Vium-Chr10415 41144 45402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10415g00002 43 176 G2-like Transcription Factor Family AT4G28610 58.209 3.71e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium10415g00002 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10415g00002 - - gmx:100783132 475.707