Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1040g00014 ATGGAGCTATCTGTGGTTGCAAGAAACATGGAAGAAGTTGTCTTGTTGGTTGATGATTTGGAATCGCTTTCTGGGATTTCTCGCTGTAGAATATGTCACGAAGAAGAATTTGAGAGCACCAAAACCTTGGAAGCTCCTTGTGCTTGTTCGGGGACAGTCAAGTTTGCTCACAGAGAGTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACCTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGCGGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATCTCAATGACTGAACAAGAACCGTTAAACGCAAGAATAGTTGAGGGAAACAATTACTCTGAATGCACATATGCTGCAGATAGAAGCGCGGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTTATCTTGCTTGTAAGACATCTTTTTGCACTGCTTACGAATGGAATGGAAGATTATCCATTTACAATTCTTACGGTATTTTTACTGAGGGCCAGTGGAATTATTATACCGATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAACGCTATCATCATCTTCATCAGGATTCTGATGATGACTCCTGGATATCAGATGGAGATGAGGAAGAAAATGAGACAGCAGATGATGCAATTTTAAGACATTGA 699 0.4063 MELSVVARNMEEVVLLVDDLESLSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRECIQTWCNEKGNTTCEICLQQYEPGYTAVQKKSQIADAAMTIRDSLQISMTEQEPLNARIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLTNGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHLHQDSDDDSWISDGDEEENETADDAILRH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1040g00014 232 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Vium1040g00014 232 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Vium1040g00014 232 SUPERFAMILY RING/U-box 28 81 - -
Vium1040g00014 232 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Vium1040g00014 232 SMART ringv_2 28 77 IPR011016 GO:0008270
Vium1040g00014 232 MobiDBLite consensus disorder prediction 212 232 - -
Vium1040g00014 232 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Vium1040g00014 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 87 IPR013083 -
Vium1040g00014 232 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 24 199 IPR033275 -
Vium1040g00014 232 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Vium1040g00014 232 CDD RING_CH-C4HC3_MARCH 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1040g00014 Vium-Chr1040 141277 143988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1040g00014 29 76 C3H Transcription Factor Family AT2G37950 44.898 1.77e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1040g00014 - - gmx:100776501 394.815