Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1040g00006 ATGGAAAAAGCACAAGCTGAGGTGAGAAAAGTGTATGGTAAGAAGGGATATGTGGATGAGAGAGACTCACAGAAACTGATATACTTGAAGTCCATAATCAAAGAAACATTAAGGTTACACCCACGTGTACCATTATTAGTTCCAAGAGAAAGTAGAGATAGGTTTGAAATCAATGGATATGAGATACCCTCTAAGACAAGGGTAATTATCAATGCTTGGGCAATTGGAAGAAATTCTGAGTATTGGACTGAAGCTGAGAGTTTCAAACCTGAAAGGTTTCATAATAATTGTATCGATTTCAAAGGTGCAGACTTTGAATTTATCCCATTTGGTGGTGGAAGAAGAATATGCCCAGGCATTACATTTGCCATCGCAAATATTGAGTTGCCACTTGCTCAATTACTTTACCATTTTGATTGGAAGCTTCCCGACAATTTGAAAATGAAGAACTTGACATGA 459 0.3725 MEKAQAEVRKVYGKKGYVDERDSQKLIYLKSIIKETLRLHPRVPLLVPRESRDRFEINGYEIPSKTRVIINAWAIGRNSEYWTEAESFKPERFHNNCIDFKGADFEFIPFGGGRRICPGITFAIANIELPLAQLLYHFDWKLPDNLKMKNLT 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1040g00006 152 Pfam Cytochrome P450 1 145 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 Gene3D Cytochrome P450 1 152 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PRINTS E-class P450 group I signature 117 140 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PRINTS E-class P450 group I signature 107 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 110 119 IPR017972 GO:0005506|GO:0016705
Vium1040g00006 152 PRINTS P450 superfamily signature 117 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PRINTS P450 superfamily signature 108 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 SUPERFAMILY Cytochrome P450 1 147 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1040g00006 152 PANTHER OS08G0105600 PROTEIN 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1040g00006 Vium-Chr1040 81148 81606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1040g00006 1 151 Cytochrome P450 AT3G26310 52.980 5.54e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1040g00006 - - var:108342947 273.092