Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1040g00005 ATGAGGAACCATGCTTCTTCCCTCTCTTTCCTTTTCCTCTTCATCCCTTTCTTCCCCACGATTCAATGCGCCGATAACACTTTCGCCCCATCCTTTTACACCGAAGAGATATACAAGGAGCTTGAAAACCTCGCCATTCTTTTAAACAAGGATATCAAAGCAGGTTTAGGTTTCTGCGTCAAGGATGTGCACAAAGATTGGGAGGAAGCATTTGATTTTAAAGGAAGGTTGGATTTCGTAGATTCTTGTGTTAAGAAAAAAGGGGATTTCAGAGATAGAATATGTACTGTGGCTGAAATAAGGTATTACTTCCATGGTTTCCTGGAACAAGGGGCAACATCTAGCAACTATGTAAAACCTAACAGGAATTGCAACTTGACTTCGTGGGTTTCTGGTTGTGAACCTGGATGGAGTTGTAGTGCTGGCAAAAATTTTGACCTCAAAAAAGACATAAAGGACATTCCCTTTAGAACCAGCAACTGTCAGGCTTGTTGTGAGGGGTTTTTCTGCCCTCAAGGATTGACTTGCATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTGAATAATGCGACTGGAGTATGTGACCCATATAGTTACCAAATACCTCAGGGAGAAACAAATCATAGTTGTGGCAGTGCTGACATATGGACGGGCGTGGTGAACAATAGTGATATCTTTTGTTCTCCAGGATCATACTGCCCCACTACAACACGTAAAGTCTCTTGTGATAGTGGATATTATTGCAGGAGGGGTTCTACTCATCAAAATAAATGCTCCAGCTTGAGTTCCTGCAATCCAAACACAGCAAACCAAAATATGCATGCTTATGGCGCTTTACTTATTGTTGCATTGAGCACTCTCCTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGTTACTCGAGAAAGGAGAAAGGCGAAATCAAGAGAAGCTGCTGCTAGACAGGTAAGGGAAACTGTGCAGGCTAGGGAACGATGGAAAATAGCAAAAGATATTGCTAAGAAAGGTAAAGGGGGAGGATTAGGTGAGCAATTATCTCGAACCTTTTCTCGGAAAAAATCAGCGAAATCAGATACCGTAAAGGTTGGTAACCAAGCTAAACGTGGTATGGGAGATACGTTTTTGCCATCGGTACAAAATTCTTCAAGCTATGAGCAACAGTCTGCAGCTTCAGACGTGCAAAAAAAGGAACCTACCAACCTTACTAAAATGTTGAATTCCCTTGAGGATGACCCACATAGCAATGAAGGATTCAACCTACAAATTGGAGATAAAAACATCAAAAAGCAGATGCCAAAGGGCAAGAATTTACACACACAAAGCCAAATTTTAAGGTATGCTTATGGTCAAATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAACTTGACTTTCTCCGGAGTTATTTCGATGGCCACAGAAGGTGAGGTTCGAACAAGGCCTGTGATTGAGGTAGCTTTTAAGGACTTAACTCTCACTTTGAAAGGTAAAAGAAAACATCTACTGAGATGTGTGTATGGTAAACTCATGCCGGGTAGAGTTTCTGCTGTGATGGGTCCCTCAGGAGCTGGCAAAACTACATTTCTTTCTGCATTGGCAGGGAAGGCAAGAGGATGCACTATGACAGGATCAATTCTAATTAATGGAAAGGCCGAATCCATTCACTGTTATCGGAAAATTATTGGTTTTGTTCCACAAGATGATATTGTGCATGGGAACTTGACCGTGGAAGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCCGCGGATATGCCAAAACCAGACAAGGTTCTGATTGTTGAAAGAGTGATTGAGTCCTTAGGACTCCAGGCAGTGAGGGATTCCCTTGTTGGGACAGTAGAAAAACGAGGTATATCTGGGGGACAACGGAAACGTGTAAATGTAGGGATGGAAATGGTTATGGAGCCATCATTATTAATCTTAGATGAACCTACAACTGGTTTAGACAGTGCATCTTCCACTTTATTGCTTAAAGCACTTCGTCGTGAAGCACTAGAAGGGGTAAATATCTGCATGGTACTTCATCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAGTGTTTCTAGCCAAAGGTGGTCTTACTGCATATCATGGTCCTGTTAAGAAAGTAGAAGAATACTTTGCTGGCATTGGAATCAATGTACCTGATAGAGTGAATCCTCCCGACCATTTCATTGACATTTTGGAAGGTTTAGTGAAACCAAATGGAGCTGTGACTCATGAGCAGCTTCCTGTCAGATGGATGTTACATAACAGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATGAAATTGCTGCAGCCTCAACAAATAGCACTGAGGCAAATCCAACAAAGCCCCTAGAGGAAGTTGATGATCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATGCGAAAAGATCATATAGAAGCAACCTTCTTAAAGACTAAGGACTTGTCTAATCGAAGAACTCCTGGTGTAGCTCGACAATACAGATACTACCTTGGACGGGTTTGTAAGCAGACGCTAAGAGAAGGAAAATCACAAGCAGTTGACTATCTTCTTTTATTGGTTGCTGGTGCTATATTAGGAACTCTTACTAAAGTAAATGACGAAACCTTTGGGTCCCTCGGATATACCTATACCGTTATTGCTGTTTCTTTACTTTGCAAGATTTCAGCTCTGAGATCATTTTCTCTGGATAAATTACAATATTGGAGGGAGAGTGCATCTGGAATCAGCAATCTGGCACATTTTTTGGCCAAAGATTCAATTGATATTTTCAATACAGTCATAAAACCTGTAGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGTTTCGCAAGTAATTATGTCATTTTGCTCTGCCTTGTGTACTGTGTAACTGGCATGGCATATATAATGGCAATTTATTTTGAGCCTGCTCCAGCACAATTGTGGTCAGTGCTTCTCCCAGTTGTTATGACTCTCATTGCAAACCAGAAGAAAGACACTCTCTTTATGAAGATCCTTGTAAAGTTGTGCTACCCAAATTGGGCTTTAGAGGCATTTATCATTGCAAATGCTGAAAGGTACACTGGAGTTTGGTTGATTACTCGGTGTAGTTCGCTAATGAATAATGGCTATAATGTCGGAGACTGGCCTATTTGTATGCTTGCCCTCGTTTTGTATGGTATAATTGCTCGAGTTGTGGCTTTCTTTTGTTTAGTGATCACTCAGAAGAAGTGA 3291 0.4084 MRNHASSLSFLFLFIPFFPTIQCADNTFAPSFYTEEIYKELENLAILLNKDIKAGLGFCVKDVHKDWEEAFDFKGRLDFVDSCVKKKGDFRDRICTVAEIRYYFHGFLEQGATSSNYVKPNRNCNLTSWVSGCEPGWSCSAGKNFDLKKDIKDIPFRTSNCQACCEGFFCPQGLTCMIPCPLGSYCPLAKLNNATGVCDPYSYQIPQGETNHSCGSADIWTGVVNNSDIFCSPGSYCPTTTRKVSCDSGYYCRRGSTHQNKCSSLSSCNPNTANQNMHAYGALLIVALSTLLIFIYNCSDQVLVTRERRKAKSREAAARQVRETVQARERWKIAKDIAKKGKGGGLGEQLSRTFSRKKSAKSDTVKVGNQAKRGMGDTFLPSVQNSSSYEQQSAASDVQKKEPTNLTKMLNSLEDDPHSNEGFNLQIGDKNIKKQMPKGKNLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGEVRTRPVIEVAFKDLTLTLKGKRKHLLRCVYGKLMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMTGSILINGKAESIHCYRKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGINVPDRVNPPDHFIDILEGLVKPNGAVTHEQLPVRWMLHNSYPVPPDMLHFADEIAAASTNSTEANPTKPLEEVDDQSFAGEFWEDMKSNVQMRKDHIEATFLKTKDLSNRRTPGVARQYRYYLGRVCKQTLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKISALRSFSLDKLQYWRESASGISNLAHFLAKDSIDIFNTVIKPVVYLSMFYFFSNPRSSFASNYVILLCLVYCVTGMAYIMAIYFEPAPAQLWSVLLPVVMTLIANQKKDTLFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMNNGYNVGDWPICMLALVLYGIIARVVAFFCLVITQKK 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1040g00005 1096 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 732 IPR003439 GO:0005524
Vium1040g00005 1096 ProSitePatterns ABC transporters family signature. 632 646 IPR017871 GO:0005524|GO:0016887
Vium1040g00005 1096 Pfam ABC transporter 513 659 IPR003439 GO:0005524
Vium1040g00005 1096 CDD ABCG_EPDR 489 715 - -
Vium1040g00005 1096 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 433 1083 - -
Vium1040g00005 1096 MobiDBLite consensus disorder prediction 379 403 - -
Vium1040g00005 1096 MobiDBLite consensus disorder prediction 340 403 - -
Vium1040g00005 1096 FunFam ABC transporter G family member 24 485 727 - -
Vium1040g00005 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 714 IPR027417 -
Vium1040g00005 1096 Gene3D - 481 727 IPR027417 -
Vium1040g00005 1096 SMART AAA_5 517 709 IPR003593 GO:0016887
Vium1040g00005 1096 Pfam ABC-2 type transporter 689 1096 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1040g00005 Vium-Chr1040 55861 62917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1040g00005 518 711 Calmodulin-binding Proteins AT2G36910 28.713 1.52e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1040g00005 - - gmx:100812387 1949.1