Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1040g00004 ATGAAGTGTTTTCCATTCTACTTTGGAGAGAAGAAGGATGGTCCCAAGAGCTTGCAGTCCATATCGGGTCGGTCCAACATTTCTACTACTGTTGAGGCTGAGATGAGGAGATCTGGTTCTGAATTGAACTCTATGGATGCCTCAGACGCCAGCACAGACTCCCTTAGGAGAAATGCATTTCCCAGCCTGTCTCAAAGACCCAGCAACCTCAGAGTATTTACTGTGCCCGAACTAAAAACATCCACAAAGAGTTTTAGTCGCTCTGTGATGCTTGGAGAGGGTGGGTTTGGGTGTGTCTACAAGGGGTTGATCAAGAGTGTTGATGATCCTTCCACAAGAATTGAAGTTGCTGTTAAACAGCTTGGCAGATGAGGAATTCAGGGGCACAAGGAATGGGTCACAGAAGTGAATGTTCTGGGTATTGTGGAGCATCCAAATCTGGTGAAACTAGTGGGATACTGTGCTGATGATGATGAAAGAGGAATCCAAAGGCTTCTGGTGTATGAATATATGCCCAACAGAAGTGTGGAACACCATTTATCACCACGATCAGAAACTCCTCTCCCATGGAATAGGAGGTTGAAAATAGCTCAAGATGCTGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATTCTTTTGGACGAGCAGTGGAAAGCAAAGCTGTCAGACTTTGGGCTAGCAAGATTGGGACCATCTGATGGGTTAACTCATGTCTCAACAGCGGTAGTTGGAACAATGGGTTATGCAGCTCCAGAGTATGTTCAAACCGGACGTCTTACATCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAGCTCATTACTGGTCGGCGGCCGATTGACCGAAATCGCCCCAAAGGTGAGCAGAAAATGTTGGAATGGATAAGGCCATACCTTTCAGATGGAAGGAAATTTCAATTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTTCAGGTCAGCACAAAAACTTGCTGTAATAGCAAACAAATGCTTGGTCAGAAACCCAAAGAATCGCCCAAAGATGAGTGAAGTGTTACAAATGGTGACTCAGGTTGTGGAGTCTTCAGTGAGTACAAATCCACAGCAACCCTTGAAGGGTGTTGTAGCCTCGGAAGAAGCTTCTGCTGAAACGGTGAACAAGAAAATTACCATGGATCAACAACCACATTGTAATTGGTTAAGGATGTGGAGACCAAAGTTTTTAAGTACATGGTTGTAG 1272 0.4403 MKCFPFYFGEKKDGPKSLQSISGRSNISTTVEAEMRRSGSELNSMDASDASTDSLRRNAFPSLSQRPSNLRVFTVPELKTSTKSFSRSVMLGEGGFGCVYKGLIKSVDDPSTRIEVAVKQLGRXGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLVYEYMPNRSVEHHLSPRSETPLPWNRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWKAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKMLEWIRPYLSDGRKFQLILDPRLERKHLFRSAQKLAVIANKCLVRNPKNRPKMSEVLQMVTQVVESSVSTNPQQPLKGVVASEEASAETVNKKITMDQQPHCNWLRMWRPKFLSTWL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1040g00004 423 FunFam Serine/threonine-protein kinase BIK1 52 170 - -
Vium1040g00004 423 FunFam Serine/threonine-protein kinase PCRK2 171 380 - -
Vium1040g00004 423 Gene3D Transferase(Phosphotransferase) domain 1 171 390 - -
Vium1040g00004 423 SUPERFAMILY Protein kinase-like (PK-like) 61 366 IPR011009 -
Vium1040g00004 423 Pfam Protein kinase domain 87 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1040g00004 423 ProSiteProfiles Protein kinase domain profile. 85 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1040g00004 423 CDD STKc_IRAK 91 368 - -
Vium1040g00004 423 PANTHER OS01G0588500 PROTEIN-RELATED 50 369 - -
Vium1040g00004 423 Gene3D Phosphorylase Kinase; domain 1 58 170 - -
Vium1040g00004 423 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1040g00004 Vium-Chr1040 41604 45745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1040g00004 1 394 Glycoside Hydrolase AT3G07070 41.404 1.50e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1040g00004 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1040g00004 - - gmx:100305438 758.829