Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1040g00001 ATGACCTCACAAGTTGTCCTACACAATTTCCCTCACTCCGAAACCAAGCCCTCAACAACTACCACCACCGATTCCCCACCCACTGCGCCGTCACTCGCCATCACCAAGAGGTCTTCCGCCGTCGTCACGCGCTCCACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGAGTCCGCATGCCTCCGCTCTGCGCCGCGCGCATTTTCCAGCTCACGCGCGAGCTCGGCCACCGCTCCGACGGTGAGACCATCGAGTGGCTCCTCCGCCACGCAGAGCCTTCCATCATTGCAGCCACCGGCTCCGGTACCATCCCCGCTGCTCCCATCTCCTCAGTCGTACCCTCTGTTCCCTCCTCCGAGTCCTCCGTCTCGGTACCGGTGGTCGGCGGCCAGGGAATGTTCTCCGTGGCGCCGCCAAGCTGCCGCCTCGACCTGTCTCCGCCACCGGGGTTGGATTTTGCGGCGACTAACGGCTATCGGCACATGCCGTTCACGGCGCTGCTGTTGCAGCCGTCTACGGGGGAGGAAAACCAGAACGACGAGTCTCTCGGCGAACAATGA 567 0.642 MTSQVVLHNFPHSETKPSTTTTTDSPPTAPSLAITKRSSAVVTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTIPAAPISSVVPSVPSSESSVSVPVVGGQGMFSVAPPSCRLDLSPPPGLDFAATNGYRHMPFTALLLQPSTGEENQNDESLGEQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1040g00001 188 MobiDBLite consensus disorder prediction 1 31 - -
Vium1040g00001 188 Pfam TCP family transcription factor 45 141 IPR017887 -
Vium1040g00001 188 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Vium1040g00001 188 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 132 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1040g00001 Vium-Chr1040 4512 5368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1040g00001 46 175 TCP Transcription Factor Family AT2G37000 60.769 7.41e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium1040g00001 TCP 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1040g00001 - - vun:114191143 318.931