Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10407g00001 ATGGCTAACGAATCCTCTTCAAATGGCTCGCCTATGTCGGATTTCATTACGGCTTCGCCTCCGCCACCGTCCTTGTCGCAGCAGTCATCGGACGATGCAGAGTCTCCGCCATCCTCGGAACCGCCGCCACAGCCTTCACAGTCATCGCCTTTACCATCACCGTCAACGTCACCACCACCCCCAGAAATCTCTTCTCCGCCACCTACCGTACCTCCGCCGAAAAAATCTCCTCCGCCGGCACCGGAGAATTCGCCTCCTCCACCAACGTCAGTTCATTCACCGCCACCATCAACTCCTTCTACTTCTCCACCACCTACCCCTTCTACTTCTCCACCACCTCCCCTTTCTCCGTCGCCACCTCCGCCAGATCAATCTTCTCCCCCGCCAAAAAGTTCTCCGCCTCCTCCGTCACCAAGACGTTCAGCTCCACCACCTTCTCTCACACCGCCGCCACGTTCACAACCGTCACCATCACCATCACCGCCACCTCCACAACCGTCACTATCACCGCCACCTCCATCACCGCAATCTTACGTTCCTCCTCCACAGTTCCTTCGGCCTTCAACTCCAACCGCAATTCCACCTTCACCGGTTTTCCGTATTACCTCGCCGCCGCTGCAGACAGCTCCAGCGTCAACACCCCATTCACAACTGCGACCACCACCAGGAGTACCACCGGGAATATTACCAGCAATACCTCCGATTTTACATATGTCTGCTCCCCAGAAGAGCAACCTTCCGCCGGTGTCTCCAAGCTCCTCCGGTAATAATAGTACAGGACAGATTGTTGGTCTTGCTCTCGTCGGGGTTTTCATCATTGCCTTTCTTGCTATGGTTATTTTCTTTTTATTAAGGAATAAGCGAGAGAACAACTATTCCGCGCCCTACCCTGGAAAATCTAACATAAGAGGAGCCGGTACACCAGGAGATGTGCATTACTTTGTAGAGGAGCCTGGTTTTGGGAATGGAGCACAACAAGGTGGCATGCATATAAGATCTCCTTCAGATCCGGCTCTGAGCGGTGGTCAGTTAGTTTTTACCTACGAAAAGATTGCGGAGATCACTAACGGGTTTTCCAGCGAAAACATCATAGGGGAGGGGGGATTTGGGTATGTTTACAAGGCTTCCATGCCTTATGGTAGAGTGGGGGCGCTTAAGATGTTGAAGGCTGGTAGTGGGCAGGGAGAAAGAGAGTTCAGGGCTGAGGTTGACACTATCAGCAGAATCCATCATCGACATTTGGTTTCACTGATTGGTTATTGCATATCAGAACAGCAAAGAGCGCTCATCTATGAGTTCGTTCCTAATGGGAATCTCAATCAGCACTTGCAGGGAAGTGAATTTCCAGTTTTGGATTGGTCCAAGAGGATGAAGATAACAATTGGTGCTGCAAGGGGCCTGACATATCTTCATGATGGATGCAACCCAAAGATTATTCACAGAGATATTAAATCGGCAAACATTCTTTTGGATAATGCTTACGAGGCACAGGTTGCAGACTTTGGGCTTGCAAAGCTAACCGACGATGCTAATACTCATGTATCAACTAGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCTTTTGGAGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAATGCAGCCCTTAGGAGAGGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCACTTGAGACAGGAGAATTTGGTGAACTAGTAGACCCTAAGCTTCAACAACAATACATTGACAAAGAAATGTCGAAAATGATTGAGGCAGCAGCAGCATGTGTTCGCCACTCTGCTCTAAAGCGACCTCGTATGGTTCAGGTGCTAAGATCCTTAGACAACGGTGACCAACTATACGATCTTTCAAATGGGGTGAGATATGGTCAGAGCACTGTTTATAATTCTGGTCAATATAATGAAGACATTGCAAGATTCAGAAAGATGGTTAATGGAAGCTTTGATGATTCTGAGTTTGATAATCTCAGCTCAGAATTCCGTTCAACTGTTTCAAGAGAAATGGTTGAACTCAACTCTGCAAGCATATCACATAGTCCACGAAATAGTGATTCACAATTTAAAGTTTTCCACCACCAAAGGAGCCAAACCCAGAACAGGTCTTAA 2178 0.4835 MANESSSNGSPMSDFITASPPPPSLSQQSSDDAESPPSSEPPPQPSQSSPLPSPSTSPPPPEISSPPPTVPPPKKSPPPAPENSPPPPTSVHSPPPSTPSTSPPPTPSTSPPPPLSPSPPPPDQSSPPPKSSPPPPSPRRSAPPPSLTPPPRSQPSPSPSPPPPQPSLSPPPPSPQSYVPPPQFLRPSTPTAIPPSPVFRITSPPLQTAPASTPHSQLRPPPGVPPGILPAIPPILHMSAPQKSNLPPVSPSSSGNNSTGQIVGLALVGVFIIAFLAMVIFFLLRNKRENNYSAPYPGKSNIRGAGTPGDVHYFVEEPGFGNGAQQGGMHIRSPSDPALSGGQLVFTYEKIAEITNGFSSENIIGEGGFGYVYKASMPYGRVGALKMLKAGSGQGEREFRAEVDTISRIHHRHLVSLIGYCISEQQRALIYEFVPNGNLNQHLQGSEFPVLDWSKRMKITIGAARGLTYLHDGCNPKIIHRDIKSANILLDNAYEAQVADFGLAKLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPMQPLGEESLVEWARPLLLRALETGEFGELVDPKLQQQYIDKEMSKMIEAAAACVRHSALKRPRMVQVLRSLDNGDQLYDLSNGVRYGQSTVYNSGQYNEDIARFRKMVNGSFDDSEFDNLSSEFRSTVSREMVELNSASISHSPRNSDSQFKVFHHQRSQTQNRS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10407g00001 725 MobiDBLite consensus disorder prediction 215 232 - -
Vium10407g00001 725 MobiDBLite consensus disorder prediction 36 201 - -
Vium10407g00001 725 Gene3D Transferase(Phosphotransferase) domain 1 434 644 - -
Vium10407g00001 725 ProSiteProfiles Protein kinase domain profile. 358 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10407g00001 725 MobiDBLite consensus disorder prediction 1 234 - -
Vium10407g00001 725 FunFam proline-rich receptor-like protein kinase PERK8 434 646 - -
Vium10407g00001 725 MobiDBLite consensus disorder prediction 696 725 - -
Vium10407g00001 725 PRINTS Proline rich extensin signature 25 46 - -
Vium10407g00001 725 PRINTS Proline rich extensin signature 83 108 - -
Vium10407g00001 725 PRINTS Proline rich extensin signature 11 23 - -
Vium10407g00001 725 PRINTS Proline rich extensin signature 46 62 - -
Vium10407g00001 725 PRINTS Proline rich extensin signature 64 81 - -
Vium10407g00001 725 SUPERFAMILY Protein kinase-like (PK-like) 335 631 IPR011009 -
Vium10407g00001 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vium10407g00001 725 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 272 684 IPR047117 -
Vium10407g00001 725 SMART serkin_6 358 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10407g00001 725 Gene3D Phosphorylase Kinase; domain 1 329 433 - -
Vium10407g00001 725 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 335 433 - -
Vium10407g00001 725 Pfam Protein tyrosine and serine/threonine kinase 361 630 IPR001245 GO:0004672|GO:0006468
Vium10407g00001 725 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10407g00001 Vium-Chr10407 1839 6886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10407g00001 247 627 Trihelix Transcription Factor Family AT1G68690 56.709 2.66e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium10407g00001 PK_Tyr_Ser-Thr 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10407g00001 - - vun:114173221 925.62