Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10400g00001 ATGTGTTCTGAAAATGGTGATTTCTCTGTGCATGTGACGAATGAAGAGGTGGTGGCAGCAGTGTTACCAATGCAGGAACATTGGCTTCCACTCTCTAACCTTGACCTGCTTCTACCTCCATTGGATGTAGGAGTATTCTTATGCTACAAGAACCCTATTATCACATCCAAACCCATGGAAGATAGTGCCACCAACAAAAGCAGCTTTGGAACCATGGTGGAGTCTTTGAAGAAGGCCTTGGCTCAAACCCTAATCTCTTATTATGTGTTTGCAGGTGAAGTCATGCTCAACAGCATGGGTGAACCTGAAGTTCTCTGTAACAATCGTGGTGTTGATTTTGTTGAAGCTCAGGCAGATGTTGAACTCAAGAACCTCAACTTTTACAACCCAGACCAATCTATTGAAGGCAAGTTTGTTCCAAAGAAGAAAAATGGTGTGCTTGTTGTACAGGCAACATCACTAAAGTGCGGTGGAATAGTTGTAGCATGTTCATTTGATCATCGCATTGCAGATGGGTATTCAGCAAACATGTTTCTGACTTCATGGGCCGACACGACCCATCCCACCAAGGCCACAACTAAGAGCCCATGTTTCTGTCGGTCCCTCCTCACTCCTCGTCGTCCATGTTCTGTGCCAACTTCCCTTCACCAAATGTACACCCCTAATTCGAAGTTCACCCCATCTCAAACCGTAACCGCCCCTCTCTTGAGTCGCATATACTACGTAACTTCTGAGAAACTTCACAGCATGCAAGCCCTTGCGAGTGGCAATGGCGGAAAACGTACGAAGCTGGAGTGTTTTTGTGCGTTGTTGTGGAAGATGGTTGCACGTGCGGCTTCAAGAGAGGGGAGCGGCAAAAGGATGGTGGCGAAAGTGGGAGTCGTGGTTGATGGAAGGAGAAGACTGTGGAAAAGTGAGAAAGTGAAGGAAGCGTTGATGGGGAATTACTTCGGGAACGTGCTTTCGATACCCTTTGGAGAGAAGGTGGTGGAGGAGTTGATGGAGAAGCCATTAGGGTTTGTGGCTGATGCGGTTCACGAGTTCTTGGCGGAGGCGACGACGGAGGAGCATTTCTTGGGGCTGGTTGATTGGGTGGAGGGTCATAGACCAGAGGGAGGGTTGGCAAGGATTTACTGTGATGGAAGTGAAGGAGGGAGCTTTGTGGTGTCTTGTGGGCAAAGGTTTTTGGAGGGGAAGATGGATTTCGGGTGGGGGAAGGTTGTGTTTGGGTCATTCTATTTTCCTTGGGGTGGTGAAGCTGGTTATGTGATGCCAATGAAGAGCCCTCTAGGGAATGGTGATTGGGTTGTGTACGTGCATCTTACCAAGGACCAATTGGAAGTCATAGAATGTGAGGCTGGTGATGTTTTTAGACCCATCACTTGGGATTACCTTAACCCTAACTTCATATTCTAG 1416 0.4774 MCSENGDFSVHVTNEEVVAAVLPMQEHWLPLSNLDLLLPPLDVGVFLCYKNPIITSKPMEDSATNKSSFGTMVESLKKALAQTLISYYVFAGEVMLNSMGEPEVLCNNRGVDFVEAQADVELKNLNFYNPDQSIEGKFVPKKKNGVLVVQATSLKCGGIVVACSFDHRIADGYSANMFLTSWADTTHPTKATTKSPCFCRSLLTPRRPCSVPTSLHQMYTPNSKFTPSQTVTAPLLSRIYYVTSEKLHSMQALASGNGGKRTKLECFCALLWKMVARAASREGSGKRMVAKVGVVVDGRRRLWKSEKVKEALMGNYFGNVLSIPFGEKVVEELMEKPLGFVADAVHEFLAEATTEEHFLGLVDWVEGHRPEGGLARIYCDGSEGGSFVVSCGQRFLEGKMDFGWGKVVFGSFYFPWGGEAGYVMPMKSPLGNGDWVVYVHLTKDQLEVIECEAGDVFRPITWDYLNPNFIF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10400g00001 471 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 427 - -
Vium10400g00001 471 Gene3D - 219 451 IPR023213 -
Vium10400g00001 471 Pfam Transferase family 9 452 - -
Vium10400g00001 471 Gene3D - 7 218 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10400g00001 Vium-Chr10400 6413 9165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10400g00001 32 450 Monolignol Biosynthesis Gene Families AT5G48930 25.227 1.65e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10400g00001 - - gmx:100777149 687.567