Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1039g00006 ATGGCGACTGTTGGAGTTGGAGCGGGTGTGGGGGGTGATATATGGAAGTCCCATGTGTCCATGGCGATGGTACAGCTTTTCAATGGTGGCTACCATGTCATCACCAAAGTGGCCCTTAATGTTGGTATCAACCAGTTAGTCTTCTGCGTATTCCGCGATCTCATTGCCCTTTCCATCCTCGCACCCTTTGCTTATATCCGTGAAAAACAGATTCGACCACCCACTACTAAGAATCTACTGGTGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAACCAGCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCGGCTGCCATACAACCGTCTATTCCAGTCTTTACCTTTATATTGGCTGTGATGATGGGTACAGAAAGAGTGAACTTAGTCAGATATGATGGTCTGGCTAAAGTTGGAGGAACCATCATCTGTGTTTCTGGTGCTGTAGTGATGGTATTGTATCGTGGTCCAGCTTTGATAGGATATGCTGATATGAATCTTGCTATACAAAATGAAATAAGTGCCAAAGGTCAGCCAGAGCCATCTGGGTGGCTAATTGGTAGTTTACAGGACTTCGGGTTAGACCATTTTCATCTTGGGGTTCTGTGCTTGATAGGGAACTGCATTTGTATGGCTGCGTTTCTAGCCATTCAGGCACCAGTATTAAAAAAATATCCTGCAAATATATCGGTCACAGCATTTTCATACTCCTTCGGAGCTTTACTAATGGTTATAGTGTCATTATTCATGAATTATGAGGCAACTGACTGGACTTTGACATCATCAGAAATCCTTGCTGTTATGTATGCTGGAACTGTTGCATCTGCCCTTAACTATGGACTCATTACATGGTGTAACAAAATCTTGGGGCCAGCCATGGTTTCCCTTTACAATCCGCTTCAACCTGCGTTTTCAGCCATCCTCTCCCAAATTTTCCTTGGAAGTCCAATTTACTTGGGAAGCATCATAGGAGGTTCTTTTATCATTACTGGTCTATATTTAGTTACTTGGGCATCATTTAGAGAAAAACGAGCATCTCTTGGAGTTGGAGGAGCTAGTCCTTCCTCTTGGGTCTCTGAACCACTTGTTCACGACAGAATTGCACTCCAGAAAGGCCACGCTTTCTCTGGGTCCTCCTCCCTTTCCTCCAAAACCTTATCAGATTAA 1185 0.4321 MATVGVGAGVGGDIWKSHVSMAMVQLFNGGYHVITKVALNVGINQLVFCVFRDLIALSILAPFAYIREKQIRPPTTKNLLVSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAAIQPSIPVFTFILAVMMGTERVNLVRYDGLAKVGGTIICVSGAVVMVLYRGPALIGYADMNLAIQNEISAKGQPEPSGWLIGSLQDFGLDHFHLGVLCLIGNCICMAAFLAIQAPVLKKYPANISVTAFSYSFGALLMVIVSLFMNYEATDWTLTSSEILAVMYAGTVASALNYGLITWCNKILGPAMVSLYNPLQPAFSAILSQIFLGSPIYLGSIIGGSFIITGLYLVTWASFREKRASLGVGGASPSSWVSEPLVHDRIALQKGHAFSGSSSLSSKTLSD 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1039g00006 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 159 - -
Vium1039g00006 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 348 - -
Vium1039g00006 394 PANTHER WAT1-RELATED PROTEIN 19 349 IPR030184 GO:0016020|GO:0022857
Vium1039g00006 394 Pfam EamA-like transporter family 205 342 IPR000620 GO:0016020
Vium1039g00006 394 Pfam EamA-like transporter family 21 157 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1039g00006 Vium-Chr1039 43940 48980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1039g00006 100 370 Nodulin-like Gene Family AT5G45370 63.370 6.99e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1039g00006 - - gmx:100787738 626.706