Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1039g00005 ATGGCGACTGTTGGAGTTGGAGCGGGTGTGGGGGGTGATATATGGAAGTCCCATGTGTCCATGGCGATGGTACAGCTTTTCAATGGTGGCTACCATGTCATCACCAAAGTGGCCCTTAATGTTGGTATCAACCAGTTAGTCTTCTGCGTATTCCGCGATCTCATTGCCCTTTCCATCCTCGCACCCTTTGCTTATATCCGTGAAAAACAGATTCGACCACCCACTACTAAGAATCTACTGGTGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAACCAGCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCGGCTGCCATACAACCGTCTATTCCAGTCTTTACCTTTATATTGGCTGTGATGATGGGTACAGAAAGAGTGAACTTAGTCAGATATGATGGTCTGGCTAAAGTTGGAGGAACCATCATCTGTGTTTCTGGTGCTGTAGTGATGGTATTGTATCGTGGTCCAGCTTTGATAGGATATGCTGATATGAATCTTGCTATACAAAATGAAATAAGTGCCAAAGGTCAGCCAGAGCCATCTGGGTGGCTAATTGGTAGTTTACAGGACTTCGGGTTAGACCATTTTCATCTTGGGGTTCTGTGCTTGATAGGGAACTGCATTTGTATGGCTGCGTTTCTAGCCATTCAGGCACCAGTATTAAAAAAATATCCTGCAAATATATCGGTCACAGCATTTTCATACTCCTTCGGAGCTTTACTAATGGTTATAGTGTCATTATTCATGAATTATGAGGCAACTGACTGGACTTTGACATCATCAGAAATCCTTGCTGTTATGTATGCTGGAACTGTTGCATCTGCCCTTAACTATGGACTCATTACATGGTGTAACAAAATCTTGGGGCCAGCCATGGTTTCCCTTTACAATCCGCTTCAACCTGCGTTTTCAGCCATCCTCTCCCAAATTTTCCTTGGAAGTCCAATTTACTTGGGAAGAATTGCACTCCAGAAAGGCCACGCTTTCTCTGGGTCCTCCTCCCTTTCCTCCAAAACCTTATCAGATTAA 1050 0.4333 MATVGVGAGVGGDIWKSHVSMAMVQLFNGGYHVITKVALNVGINQLVFCVFRDLIALSILAPFAYIREKQIRPPTTKNLLVSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAAIQPSIPVFTFILAVMMGTERVNLVRYDGLAKVGGTIICVSGAVVMVLYRGPALIGYADMNLAIQNEISAKGQPEPSGWLIGSLQDFGLDHFHLGVLCLIGNCICMAAFLAIQAPVLKKYPANISVTAFSYSFGALLMVIVSLFMNYEATDWTLTSSEILAVMYAGTVASALNYGLITWCNKILGPAMVSLYNPLQPAFSAILSQIFLGSPIYLGRIALQKGHAFSGSSSLSSKTLSD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1039g00005 349 PANTHER WAT1-RELATED PROTEIN 19 328 IPR030184 GO:0016020|GO:0022857
Vium1039g00005 349 Pfam EamA-like transporter family 21 157 IPR000620 GO:0016020
Vium1039g00005 349 Pfam EamA-like transporter family 205 327 IPR000620 GO:0016020
Vium1039g00005 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 328 - -
Vium1039g00005 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1039g00005 Vium-Chr1039 43929 48980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1039g00005 10 276 Nodulin-like Gene Family AT3G45870 67.790 8.29e-120 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1039g00005 - - gmx:100787738 571.237