Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1039g00003 ATGGCAGAAGGTTTAGAATCAATGGGAGTTGTATCAGTGAGGAGTAGATCGTGGAAAGCTCATATGGGCATGACACTGTCACAGGCATTCTATGGTGGCTACCATGTAATCACAAAAGTGGCCCTTAATGTTGGGGTCAACCAACTAGTTTTCTGCTTCTACAGGGATCTCCTTGCCTTCACTATTCTTGCTCCTCTCGCTTTTTTTCTTGAAAGAAGAACTAGACCACCCCTTACCAAGAAGCTACTGATGTCCTTCTTCATTCTTGGATTGACTGGGGTATTTGGCAACCAGCTTTTGTTTCTTATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCTGTACAGCCAACCATTCCAGTCTTCACATTTTTGTTTACTTTGATGATGGGAATAGAAAAACTGAACTTGCTCACATATGAAGGTTGGGCAAAGGCTGGAGGAACTCTTTTATGTGTTTCAGGAGCCATATTTATGGTTTTTTATCGTGGTCCAGCTGTGATAGGGGATAACGAAACGAACCAAGTTACGCAAATTAAACCAAGTGGCAGAGGCCAGCCAGAGCCTTCAGTATGGTTAATCAACAGTTATCTTGATATTGGATTAGATAACTTTCAGCTTGGGGTTGTGTTCTTGATAGGGAACTGCATATGCATGGCTGCTTATCTAGCCCTTCAGGCACCATTATTGAAAAAGTATCCATCAAATCTATCTGTCACAGCATATTCATTCGCCTTTGGAGTTGCACTGTTGGTGATTGCTTCATTTTTCATGGTTAACGAGTCAACTGACTGGATTTTGACACAATCAGAGATACTGGCTGTTGCATATGCTTCTAAAATAAAGAGGAGAAAAATTAGATCAAGTTCTTCATGA 879 0.4084 MAEGLESMGVVSVRSRSWKAHMGMTLSQAFYGGYHVITKVALNVGVNQLVFCFYRDLLAFTILAPLAFFLERRTRPPLTKKLLMSFFILGLTGVFGNQLLFLIGLSYTNPTYAAAVQPTIPVFTFLFTLMMGIEKLNLLTYEGWAKAGGTLLCVSGAIFMVFYRGPAVIGDNETNQVTQIKPSGRGQPEPSVWLINSYLDIGLDNFQLGVVFLIGNCICMAAYLALQAPLLKKYPSNLSVTAYSFAFGVALLVIASFFMVNESTDWILTQSEILAVAYASKIKRRKIRSSSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1039g00003 292 PANTHER WAT1-RELATED PROTEIN 22 280 IPR030184 GO:0016020|GO:0022857
Vium1039g00003 292 Pfam EamA-like transporter family 24 143 IPR000620 GO:0016020
Vium1039g00003 292 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1039g00003 Vium-Chr1039 34080 37873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1039g00003 12 279 Nodulin-like Gene Family AT3G45870 59.779 6.15e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1039g00003 - - gmx:100793730 459.914