Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1039g00002 ATGGCAGAAGGTTTAGAATCAATGGGAGTTGTATCAGTGAGGAGTAGATCGTGGAAAGCTCATATGGGCATGACACTGTCACAGGCATTCTATGGTGGCTACCATGTAATCACAAAAGTGGCCCTTAATGTTGGGGTCAACCAACTAGTTTTCTGCTTCTACAGGGATCTCCTTGCCTTCACTATTCTTGCTCCTCTCGCTTTTTTTCTTGAAAGAAGAACTAGACCACCCCTTACCAAGAAGCTACTGATGTCCTTCTTCATTCTTGGATTGACTGGGGTATTTGGCAACCAGCTTTTGTTTCTTATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCTGTACAGCCAACCATTCCAGTCTTCACATTTTTGTTTACTTTGATGATGGGAATAGAAAAACTGAACTTGCTCACATATGAAGGTTGGGCAAAGGCTGGAGGAACTCTTTTATGTGTTTCAGGAGCCATATTTATGGTTTTTTATCGTGGTCCAGCTGTGATAGGGGATAACGAAACGAACCAAGTTACGCAAATTAAACCAAGTGGCAGAGGCCAGCCAGAGCCTTCAGTATGGTTAATCAACAGTTATCTTGATATTGGATTAGATAACTTTCAGCTTGGGGTTGTGTTCTTGATAGGGAACTGCATATGCATGGCTGCTTATCTAGCCCTTCAGGCACCATTATTGAAAAAGTATCCATCAAATCTATCTGTCACAGCATATTCATTCGCCTTTGGAGTTGCACTGTTGGTGATTGCTTCATTTTTCATGGTTAACGAGTCAACTGACTGGATTTTGACACAATCAGAGATACTGGCTGTTGCATATGCTGGAACTATTGCATCTGCTCTTAACTACGGAATCATTTCATGGAGCACTAAGATCTTGGGGCCAGCTTTGGTTTCCCTTTACAATCCTCTTCAACCTGCATTTTCTGCCTTCCTTTCACAAATTTTCCTTGGCACTCCAATTTACCTGGGAAGCATCCTAGGGGGATCTTTCATCATTGCTGGTCTATATTTAGTTACTTGGGCATCTTATAGAGAAAGACAAGAAACTTATGGAGTTACTCCTAATGGCTCTTGGATCTCTGAACCACTTCTTCATGAAAAAAGTGAATACCAGAATGATCACACTCAGGGTCCTCCAGCGTAA 1161 0.4169 MAEGLESMGVVSVRSRSWKAHMGMTLSQAFYGGYHVITKVALNVGVNQLVFCFYRDLLAFTILAPLAFFLERRTRPPLTKKLLMSFFILGLTGVFGNQLLFLIGLSYTNPTYAAAVQPTIPVFTFLFTLMMGIEKLNLLTYEGWAKAGGTLLCVSGAIFMVFYRGPAVIGDNETNQVTQIKPSGRGQPEPSVWLINSYLDIGLDNFQLGVVFLIGNCICMAAYLALQAPLLKKYPSNLSVTAYSFAFGVALLVIASFFMVNESTDWILTQSEILAVAYAGTIASALNYGIISWSTKILGPALVSLYNPLQPAFSAFLSQIFLGTPIYLGSILGGSFIIAGLYLVTWASYRERQETYGVTPNGSWISEPLLHEKSEYQNDHTQGPPA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1039g00002 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 54 162 - -
Vium1039g00002 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 350 - -
Vium1039g00002 386 Pfam EamA-like transporter family 24 143 IPR000620 GO:0016020
Vium1039g00002 386 Pfam EamA-like transporter family 208 345 IPR000620 GO:0016020
Vium1039g00002 386 PANTHER WAT1-RELATED PROTEIN 22 352 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1039g00002 Vium-Chr1039 34080 39137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1039g00002 103 373 Nodulin-like Gene Family AT5G45370 58.909 1.05e-113 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1039g00002 - - gmx:100793730 637.491