Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10398g00005 ATGCAAATTGACAATCTTTTGCGTGAGAGAGGGAGAGAACCTAAGTATGTTGGTCCATATAGGGTAACTGATGATGAGTCTCTAGCAGCTGCAATGGAAGCAGCTGGGAGAATAAGATTGATGATTGAAGCGAAGCTTTCTCCTGGACCCTCCATTTGCAATATTCGTCGACATGGTGACAATAGCCGTTTGCATGAAGTTGGTGTCAGTGTTGCAAGTGGAAACTTTCTTGCAGCCAAGAGAAGAGGGGTTGTCAAAGGAGTTGATTTTGGGTCAACTGGGGAGGTTAAAAAAGTAGACGTTTCTCGCATGCGTGAGAGGCTTGATGGCAACTGCATTGTTATTTTAAGCAACTTGGGTTACTCCAGCTCTGGAGAAGTATTAGATTGCAATACCTATGAAGTTGCAACAGCTTGTGCGTTGGCAATAGGAGCAGACAAGCTTATATGCATTATGGATGGTCCGATCCTGGATGAAAGTGGACACCTTATTCGCTTCTTGACTCTTCAAGAGGCAGACATGCTAATCCGTAAACGGGTTGAACAAAGTGAAACAGCTGCTAACTATGTCAAAGCTGTTGCGGAAGAAAGTTTCAACACACTTAATAAATTTAATGGGGATCCGCGGAATGGAAATCCGTTTTCAGGACTTCATATTGCAACCTTCCATAATGGTGTTGGTTTTGACAGTGGGAATGGCCTTTGGTCTGGGGAGCAGGGTTTTGCTATAGGAGGTCAGGAGTCCCTAAGTCGGACGAGTGGTTACCTGTCAGAGCTAGCTGCAGCAGCTTTCGTTTGCAGAGGCGGTGTTCAAAGAGTTCATTTGTTGGATGGCACTATTAGTGGAGTTCTATTGTTGGAATTGTTCAAGAGAGATGGGATGGGGACAATGGTGGCTAGTGACCTTTATGAAGGCACCCGGATGGCTCAAGGAACAGATATTTCTGGAATTAAACAACTTATCCAGCCTTTACAGGAGTCTGGCATATTAGTTATGCGGACTGATGAAGAGCTGCTTCAATCGTTAGGGTCCTTCATTGTTGTGGAAAGAGAAGGTCAAATAATTGCTTGCGCTGCACTTTTTCCTTTCTTTGAAGAGAAGTGTGGAGAGGTTGCTGCAATTGCAGTATCCCCTGATTGTAGAGGCCAAGGACAGGGAGACAAATTACTCGATTATATAGAGAAGAAGGCATCATATCTTGGATTTGAAATGCTTTTCTTGCTTACAACTCGTACAGCAGATTGGTTTGTGAGACGTGGATTTTCAGAATGTTCAATTGATTTTATTCCTGAGAAGAAAAGGAAAAAGATTAATCTATCCCGCAAGTCCAAGTATTACAGGAAGAAGCTTCTACCTAATAAGAGTGGAATTACTTTTGGTAGCAATTTTTCTTCCCATTAG 1401 0.4304 MQIDNLLRERGREPKYVGPYRVTDDESLAAAMEAAGRIRLMIEAKLSPGPSICNIRRHGDNSRLHEVGVSVASGNFLAAKRRGVVKGVDFGSTGEVKKVDVSRMRERLDGNCIVILSNLGYSSSGEVLDCNTYEVATACALAIGADKLICIMDGPILDESGHLIRFLTLQEADMLIRKRVEQSETAANYVKAVAEESFNTLNKFNGDPRNGNPFSGLHIATFHNGVGFDSGNGLWSGEQGFAIGGQESLSRTSGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLLELFKRDGMGTMVASDLYEGTRMAQGTDISGIKQLIQPLQESGILVMRTDEELLQSLGSFIVVEREGQIIACAALFPFFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASYLGFEMLFLLTTRTADWFVRRGFSECSIDFIPEKKRKKINLSRKSKYYRKKLLPNKSGITFGSNFSSH 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10398g00005 466 Gene3D - 1 303 IPR036393 -
Vium10398g00005 466 SUPERFAMILY Carbamate kinase-like 2 300 IPR036393 -
Vium10398g00005 466 Gene3D - 304 450 - -
Vium10398g00005 466 CDD NAT_SF 345 407 - -
Vium10398g00005 466 Hamap Amino-acid acetyltransferase [argA]. 1 450 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vium10398g00005 466 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 308 453 IPR016181 -
Vium10398g00005 466 Pfam Acetyltransferase (GNAT) family 343 407 IPR000182 GO:0016747
Vium10398g00005 466 PANTHER AMINO-ACID ACETYLTRANSFERASE 1 458 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vium10398g00005 466 PIRSF ArgA 1 450 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vium10398g00005 466 NCBIfam amino-acid N-acetyltransferase 259 450 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vium10398g00005 466 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 300 452 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10398g00005 Vium-Chr10398 20557 27196 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium10398g00005 Acetyltransf_1 1.1e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10398g00005 K14682 - gmx:100800925 828.55