LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium10398g00004	ATGGCGGCTTTGTCTTCCACATCCCTTCCAAACCTTCCCAAATTTTCATCCCACAAATTCAATTTCCACCCACAACAGCTACTCAGTTTACGCCCTCGCTCCCCAAAATCGAAGCCAAACAACCCCTTATTTTTTACCAGAGTCCCAACCTCTACATGCGAGCGCTGCAACGTGTTCAGCGAGGAACTGATCGGAAGCGTGGCGGAGGAGGAGGGTTACAGCAGCTCCATGGACGATAGGCAATTCGTGCGTTGGTTCCGTGAGACGTGGCCGTACTTGAGGGTCCACCGTGGTGCGACCTTCGTTGTCATCGTTTCCGGTGAAATTGTTGCTAGTCGTTACTTGGATCCCATTCTCAAGGATATAGCCTTTCTTCATCACCTGGGAATCCGGTTTGTTCTTGTTCCGGGGACCCATATGCAAATTGACAATCTTTTGCGTGAGAGAGGGAGAGAACCTAAGTATGTTGGTCCATATAGGGTAACTGATGATGAGTCTCTAGCAGCTGCAATGGAAGCAGCTGGGAGAATAAGATTGATGATTGAAGCGAAGCTTTCTCCTGGACCCTCCATTTGCAATATTCGTCGACATGGTGACAATAGCCGTTTGCATGAAGTTGGTGTCAGTGTTGCAAGTGGAAACTTTCTTGCAGCCAAGAGAAGAGGGGTTGTCAAAGGAGTTGATTTTGGGTCAACTGGGGAGGTTAAAAAAGTAGACGTTTCTCGCATGCGTGAGAGGCTTGATGGCAACTGCATTGTTATTTTAAGCAACTTGGGTTACTCCAGCTCTGGAGAAGTATTAGATTGCAATACCTATGAAGTTGCAACAGCTTGTGCGTTGGCAATAGGAGCAGACAAGCTTATATGCATTATGGATGGTCCGATCCTGGATGAAAGTGGACACCTTATTCGCTTCTTGACTCTTCAAGAGGCAGACATGCTAATCCGTAAACGGGTTGAACAAAGTGAAACAGCTGCTAACTATGTCAAAGCTGTTGCGGAAGAAAGTTTCAACACACTTAATAAATTTAATGGGGATCCGCGGAATGGAAATCCGTTTTCAGGACTTCATATTGCAACCTTCCATAATGGTGTTGGTTTTGACAGTGGGAATGGCCTTTGGTCTGGGGAGCAGGGTTTTGCTATAGGAGGTCAGGAGTCCCTAAGTCGGACGAGTGGTTACCTGTCAGAGCTAGCTGCAGCAGCTTTCGTTTGCAGAGGCGGTGTTCAAAGAGTTCATTTGTTGGATGGCACTATTAGTGGAGTTCTATTGTTGGAATTGTTCAAGAGAGATGGGATGGGGACAATGGTGGCTAGTGACCTTTATGAAGGCACCCGGATGGCTCAAGGAACAGATATTTCTGGAATTAAACAACTTATCCAGCCTTTACAGGAGTCTGGCATATTAGTTATGCGGACTGATGAAGAGCTGCTTCAATCGTTAGGGTCCTTCATTGTTGTGGAAAGAGAAGGTCAAATAATTGCTTGCGCTGCACTTTTTCCTTTCTTTGAAGAGAAGTGTGGAGAGGTTGCTGCAATTGCAGTATCCCCTGATTGTAGAGGCCAAGGACAGGGAGACAAATTACTCGATTATATAGAGAAGAAGGCATCATATCTTGGATTTGAAATGCTTTTCTTGCTTACAACTCGTACAGCAGATTGGTTTGTGAGACGTGGATTTTCAGAATGTTCAATTGATTTTATTCCTGAGAAGAAAAGGAAAAAGATTAATCTATCCCGCAAGTCCAAGTATTACAGGAAGAAGCTTCTACCTAATAAGAGTGGAATTACTTTTGGTAGCAATTTTTCTTCCCATTAG	1818	0.4494	MAALSSTSLPNLPKFSSHKFNFHPQQLLSLRPRSPKSKPNNPLFFTRVPTSTCERCNVFSEELIGSVAEEEGYSSSMDDRQFVRWFRETWPYLRVHRGATFVVIVSGEIVASRYLDPILKDIAFLHHLGIRFVLVPGTHMQIDNLLRERGREPKYVGPYRVTDDESLAAAMEAAGRIRLMIEAKLSPGPSICNIRRHGDNSRLHEVGVSVASGNFLAAKRRGVVKGVDFGSTGEVKKVDVSRMRERLDGNCIVILSNLGYSSSGEVLDCNTYEVATACALAIGADKLICIMDGPILDESGHLIRFLTLQEADMLIRKRVEQSETAANYVKAVAEESFNTLNKFNGDPRNGNPFSGLHIATFHNGVGFDSGNGLWSGEQGFAIGGQESLSRTSGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLLELFKRDGMGTMVASDLYEGTRMAQGTDISGIKQLIQPLQESGILVMRTDEELLQSLGSFIVVEREGQIIACAALFPFFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASYLGFEMLFLLTTRTADWFVRRGFSECSIDFIPEKKRKKINLSRKSKYYRKKLLPNKSGITFGSNFSSH	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium10398g00004	605	CDD	NAT_SF	484	546	-	-
	Vium10398g00004	605	CDD	AAK_NAGS-ABP	81	437	IPR033719	-
	Vium10398g00004	605	Gene3D	-	443	589	-	-
	Vium10398g00004	605	Pfam	Acetyltransferase (GNAT) family	482	546	IPR000182	GO:0016747
	Vium10398g00004	605	SUPERFAMILY	Carbamate kinase-like	77	439	IPR036393	-
	Vium10398g00004	605	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	439	591	IPR000182	GO:0016747
	Vium10398g00004	605	NCBIfam	amino-acid N-acetyltransferase	398	589	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Vium10398g00004	605	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	447	592	IPR016181	-
	Vium10398g00004	605	Gene3D	-	80	442	IPR036393	-
	Vium10398g00004	605	PANTHER	AMINO-ACID ACETYLTRANSFERASE	68	597	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Vium10398g00004	605	Hamap	Amino-acid acetyltransferase [argA].	75	589	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Vium10398g00004	605	Pfam	Amino acid kinase family	102	313	IPR001048	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium10398g00004	Vium-Chr10398	20557	27558	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	GNAT	Vium10398g00004		AA_kinase	6.4e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium10398g00004	K14682		-	gmx:100800925	1017.68