Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10398g00001 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCTTTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTTAGTGCTATTTTGCGCATGCGTTCAAACGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAGCCTACCTGCCCCCAAAATTGACAATAACCATATGGCTTTAAGTACTGTCGTTCATCATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGATCATTGCAATCTCCTAGTTTTAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAAGGTGCCATTATTTCTTACATGGAG 450 0.4156 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRSLPAPKIDNNHMALSTVVHHDEVLDTKPLAVSGGSLQSPSFKEQISRLVDNHILEAIVNMKEQKGSDKGAIISYME 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10398g00001 150 PANTHER SINGLE MYB HISTONE 4 1 150 IPR044597 GO:0003691
Vium10398g00001 150 FunFam Telomere repeat-binding factor 1 2 58 - -
Vium10398g00001 150 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vium10398g00001 150 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Vium10398g00001 150 SMART sant 4 59 IPR001005 -
Vium10398g00001 150 CDD SANT_TRF 6 57 - -
Vium10398g00001 150 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vium10398g00001 150 Gene3D - 2 59 - -
Vium10398g00001 150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10398g00001 Vium-Chr10398 1530 3069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10398g00001 1 150 Single Myb Histone (SMH) Gene Family AT5G67580 60.784 1.36e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium10398g00001 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10398g00001 K09422 - gmx:100779583 277.715