Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10394g00001 ATGGTTCTTGCTTTGTTCCTTGGCAGGAGTTACTACAGATGCACACATCAGAAGTTATACGAATGCCAAGCCAAGAAGATGGTGCAAAGACTTGATCACAATGCTAACATATTTGAGGTAACATACAGAGGGAAACACACGTGCCATATGTCCTCCACAGCACCATCGTCAGTTCCCCCAGAACATATTTTGCTCGACATCACACAAAATACTAACACCACTTCCTCTCAATTGTCTCCGTCAGTCAATCTCAGCCTCCATCCCGCTAGTGGCGCCGCCGCCACCACTGGTGGCAGGGCCGGACCCTCCACCTCAAGATACGGTGCTGATTATCCCGTCGTAGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGCGGCAACAACAGCATGGAATTTATCTTCTCTCCCACGGAAGATAAAAGTGATGCAAATTGA 441 0.4807 MVLALFLGRSYYRCTHQKLYECQAKKMVQRLDHNANIFEVTYRGKHTCHMSSTAPSSVPPEHILLDITQNTNTTSSQLSPSVNLSLHPASGAAATTGGRAGPSTSRYGADYPVVDMADAMFNSGSSSGNNSMEFIFSPTEDKSDAN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10394g00001 146 SMART WRKY_cls 1 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10394g00001 146 ProSiteProfiles WRKY domain profile. 9 51 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10394g00001 146 Pfam WRKY DNA -binding domain 9 48 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium10394g00001 146 Gene3D WRKY domain 6 51 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium10394g00001 146 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 68 IPR044810 GO:0003700
Vium10394g00001 146 SUPERFAMILY WRKY DNA-binding domain 7 50 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10394g00001 Vium-Chr10394 880 1320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10394g00001 2 143 WRKY Transcription Factor Family AT2G40740 43.056 4.33e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium10394g00001 WRKY 4.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10394g00001 - - vum:124819734 266.159