Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10391g00006 ATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCCGAAGAGGATGAGGCCCTGCAGAAGCTGGTGGAGAGGCACGGGCCCAGAAACTGGTCGCTCATAAGCAGGTCAATCCCGGGCCGCTCTGGAAAATCCTGCAGGCTCCGATGGTGCAACCAGCTGTCGCCCCAGGTTGAGCACCGGGCTTTCACGCCCGAGGAAGACGACACAATAATCCGCGCTCATGCCCGTTTCGGCAACAAGTGGGCCACCATAGCCCGCCTTCTTTCGGGTCGCACCGATAACGCTATCAAAAACCACTGGAACTCAACCTTAAAGCGCAAGTGCGCCTCCATCATGATCGCCGAAGATCCCGCCGCCGCCGCTGCCGGTTTCAGTCCGCAGCCTCTCAAGCGTTCCTTCAGCGCCGGCGCTGCCCTGCCCCCGGGAAGCCCCTCGGGATCCGATGTGAGCGAGACCAGCGCCCCTGGTGTAGTCTCCCCATCGCACGTGTTCCGGCCCGTGGCGGTTCGACCCGTGGTCGAAACGGCGTCGTCGTGCGACGACGGTCCCACCACCTCGCTGTCGCTGTCTCTTCCCGGCGTGGAGTCATCGGAAACCTCGAATCGGGCAGGCGCGATGCAAGCTAATCCCTTCACTATGGCGCCGGTGACGACCGTAGCGAGTCCGGCGGCGGAGGTTGGAATGGGAGCGTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCATGAGATGATAAAGAAGGAGGTTCGGAGTTACATGGAGCAGCAGAGTGCGATGTGTTTTCAGGGTGTGGACGGTTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCCTAA 867 0.6032 MMAVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIAEDPAAAAAGFSPQPLKRSFSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVAVRPVVETASSCDDGPTTSLSLSLPGVESSETSNRAGAMQANPFTMAPVTTVASPAAEVGMGALNLSAEFMAVMHEMIKKEVRSYMEQQSAMCFQGVDGFRNVSVKRIGISRVDS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10391g00006 288 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Vium10391g00006 288 MobiDBLite consensus disorder prediction 139 163 - -
Vium10391g00006 288 CDD SANT 15 57 IPR001005 -
Vium10391g00006 288 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Vium10391g00006 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Vium10391g00006 288 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Vium10391g00006 288 PANTHER MYB PROTEIN-RELATED 13 198 - -
Vium10391g00006 288 FunFam Transcription factor MYB44 67 113 - -
Vium10391g00006 288 Gene3D - 66 126 - -
Vium10391g00006 288 CDD SANT 67 110 IPR001005 -
Vium10391g00006 288 MobiDBLite consensus disorder prediction 181 203 - -
Vium10391g00006 288 MobiDBLite consensus disorder prediction 184 203 - -
Vium10391g00006 288 SMART sant 12 61 IPR001005 -
Vium10391g00006 288 SMART sant 64 112 IPR001005 -
Vium10391g00006 288 Gene3D - 12 64 - -
Vium10391g00006 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Vium10391g00006 288 Pfam Myb-like DNA-binding domain 16 73 - -
Vium10391g00006 288 FunFam MYB transcription factor 13 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10391g00006 Vium-Chr10391 63984 65268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10391g00006 5 287 MYB Transcription Factor Family AT4G37260 50.464 4.89e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium10391g00006 Myb_DNA-bind_6 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10391g00006 K09422 - gmx:100806145 449.899