Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10391g00005 ATGGAAACGCTTCCTTACTCGATCCCCTCCACCAAATTGCACTCCCTTCATATTTACACCGGTGCTTCACGAATTCGATCCTCCAGGCTCCCTTTTCGCCCTACCCGATTTTCAGCCAAACCTTTATATTCCCCCAAATTTTTCATTCTCCCTCGTCACAGGCTTCGCTGCGTCGCTGAATCCTCCGACAATCACCACAACAGCCACCACCACGACCATCACGACCATCACGGTCATCACCACCATCACGACCATCATGGTCACCACCACCACCACCACCATCACCACTCGCACGGCATCGATGCTGCTAATCTCACCGGGCCCCAAAAGGCGGTTATCGCGTTCGCCAAAGCTACCAGATGGATGGACCTGGCAGATATCCTGAGAGAGCACTTGCATCTGTGCTGTTTCTCCACCGCTTTATTTGTGGCTGCTGCCATTTGCCCTCATACCTTGCCCAAGCCACTCGTCAGGCCTTTTCAAAACTCTCTCATTTTCATCGCATTCCCTTTGGTTGGGGTTTCTGCATCACTCGATGCTCTTATTGAGATCAGTAGTGGAAAAGTGAACATCCATGTGTTAATGGCAATGGCGGCCTTTGCATCGATATTTATGGGAAACTCTTTGGAAGGAGGCTTGCTACTTGCCATGTTTAATCTGGCGCATATAGCGGAAGAGTATTTCACTAGCCGATCGATGGTTGATGTCAGAGAGTTGAAAGAAAATAATCCAGATTTTGCCCTTGTTCTGGATACCAAGGATGATAAACTCCCCAATACATTTGACTTGGCATACAAGAGGATTCCCGTGCATGATGTAACTGTAGGATCATATATTCTGGTTGGAGCCGGCGAGTCTGTACCAGTAGATTGTGAAGTATTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTGAAACCTTTGGAAGCCAAAGTTGGAGACAGAATTCCTGGTGGTGCAAGGAACTTGGATGGGAGGATAATTTTGAAGGTAACAAAAACTTGGAAGGAATCGACTCTCAGCAAAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGATATAGCCAAGTTGTTGTGGTGCTATCCATTGCAATTGCTGTTATTGGACCACTTCTATTTAAGTGGCCGTTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCGTTAGGGCTTATGGTGGCAGCATCACCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGTTCCTGTGCCAAAAAGGGAATACTGCTCAAAGGTGGGCATGTTCTAGATGCTCTAGCTTCTTGTCGTACTATTGCATTTGACAAAACAGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAACCAATTTATGGTCATCATTTTAGAAACAATGAATCAAAATTTTCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCGGTTGCTGCAGCTATGGAAAAGGGTACTACACACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTTCCGTTGAGAGTTTTGAATACTTTCCTGGTAGAGGCGTTACTGCTACGGTTAACAACATTGAGTCAGGAAGTGGAGATGCCAAACTATTAAAAGCATCACTTGGGTCTATAGATTTCATCACTTCTTTTTGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCGGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATTTAGAGGATAGACCTCGTCCTGGGGTTTTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGTGTGATGATGTTAACCGGAGATCACGAGTCTAGTGCGAAGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAGGATAAGTTGAGTCATGTGAAGGATACCTCAAGGGATATGGGAGGAGGCCTAATTATGGTGGGTGAAGGCATCAATGATGCCCCAGCACTAGCTGCAGCAACTGTTGGGATAGTTCTTGCTCACCGTGCTAGTGCAACAGCCATAGCTGTTGCAGACGTATTGTTGCTTAGAGAAAACATTTCTGCAGTGCCATTTTGTATTGCAAAGTCTCGCCAGACAACTTCACTGATTAAACAAAATGTGGCTCTGGCATTGACGTCCATAGTTATAGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCTTGCTTGTGTGTCTCAATTCCGTACGTGCTCTAAATGAGCCATCTTGGTCATGGAAGCATGATATCTTACATTTGATTAGCCAGATTAAATCTAGTCTTCTGTCTCTCAAGACAAATATCACGGGCTCAAACAGTATCATAACGGCGAATTTGTAA 2496 0.4467 METLPYSIPSTKLHSLHIYTGASRIRSSRLPFRPTRFSAKPLYSPKFFILPRHRLRCVAESSDNHHNSHHHDHHDHHGHHHHHDHHGHHHHHHHHHSHGIDAANLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVRPFQNSLIFIAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTKDDKLPNTFDLAYKRIPVHDVTVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIILKVTKTWKESTLSKIVQLTEEAQSNKPKLQRWLDEFGERYSQVVVVLSIAIAVIGPLLFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCAKKGILLKGGHVLDALASCRTIAFDKTGTLTTGGLVFKAIEPIYGHHFRNNESKFSSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSISVESFEYFPGRGVTATVNNIESGSGDAKLLKASLGSIDFITSFCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKFRVMMLTGDHESSAKRVASAVGINEFHCNLKPEDKLSHVKDTSRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVIASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDILHLISQIKSSLLSLKTNITGSNSIITANL 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10391g00005 831 Gene3D - 450 738 IPR023214 -
Vium10391g00005 831 PRINTS P-type cation-transporting ATPase superfamily signature 687 706 - -
Vium10391g00005 831 PRINTS P-type cation-transporting ATPase superfamily signature 711 723 - -
Vium10391g00005 831 PRINTS P-type cation-transporting ATPase superfamily signature 101 115 - -
Vium10391g00005 831 PRINTS P-type cation-transporting ATPase superfamily signature 633 643 - -
Vium10391g00005 831 PRINTS P-type cation-transporting ATPase superfamily signature 610 621 - -
Vium10391g00005 831 MobiDBLite consensus disorder prediction 60 102 - -
Vium10391g00005 831 SFLD C1.7: P-type atpase like 439 740 - -
Vium10391g00005 831 SUPERFAMILY Calcium ATPase, transduction domain A 265 350 IPR008250 -
Vium10391g00005 831 Gene3D - 468 618 IPR023299 GO:0000166
Vium10391g00005 831 SUPERFAMILY HAD-like 455 787 IPR036412 -
Vium10391g00005 831 Gene3D - 229 355 - -
Vium10391g00005 831 NCBIfam heavy metal translocating P-type ATPase 191 789 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium10391g00005 831 Pfam haloacid dehalogenase-like hydrolase 454 700 - -
Vium10391g00005 831 NCBIfam HAD-IC family P-type ATPase 216 478 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10391g00005 831 NCBIfam HAD-IC family P-type ATPase 567 767 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10391g00005 831 Pfam E1-E2 ATPase 265 437 - -
Vium10391g00005 831 MobiDBLite consensus disorder prediction 70 98 - -
Vium10391g00005 831 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 45 825 - -
Vium10391g00005 831 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 772 IPR023298 -
Vium10391g00005 831 CDD P-type_ATPase_HM 135 789 - -
Vium10391g00005 831 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Vium10391g00005 831 SFLD p-type atpase 439 740 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10391g00005 Vium-Chr10391 43094 58542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10391g00005 91 811 Primary Pumps ATPases AT4G37270 75.451 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10391g00005 K01534 - gmx:100776309 1418.29