Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10388g00001 ATGATCATTGAAATTGTGGTGATGTATCCAATTCAGCACCGCAAGTACAGGAGCGGAATCAACAACCTCTTGGTTCTTCTGATTGGAGGGATTCCCATTGCCATGCCTACAGTGTTGTCAGTAACAATGGCAATTGGTTCCCACAGGCTCTCTGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGATATGGCTGGGATGGATGTTCTGTGCAGTGACAAGACTGGCACTCTAACACTTAACAAGCTTACAGTGGACAAGTCTTTGATTGAGATTTTCTCAAGAGATGCTGACAAGGATACAGTAATTTTGCTTGGGGCTAGGGCCTCCAGAGTTGAAAACCAGGATGCTATTGATACTTGCATAGTTGGAATGTTGGGCGATCCAAAAGAGGCTAGAGATGGCATTACAGAGGTGCATTTTCTGCCATTTAACCCGGTGGACAAACGCACAGCCATAACATACATAGACAGTGAAGGTAAGTGGTACCGAGTAAGCAAAGGTGCACCAGAACAGATTATCGAGCTCTGCAACCTTCGGGAAGAAGTGAAGAAGAAGGCTTTATCCATCATTGGTAAATTTGCTGACCGCGGTCTTCGTTCGCTTGCTGTGGCGAAACAAGAGGTGCCAGAAAAGACAAAGGAGAGTGCTGGAGGACCATGGCAGTTCGTGGGTCTGTTGCCACTCTTTGACCCACCAAGGCATGACAGTGCTGAGACTATAAGGCGCGCTCTCCATCTAGGAGTTAACGTTAAGATGATTACAGGTGATCAGCTAGCCATCGGCAAGGAAACTGGTCGCAGACTTGGCATGGGAAGCAACATGTATCCTTCTTCATCCCTCCTCGGTCAGCATAAGGATGAGTCCATTGCTGCACTTCCCATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCCGGTGTCTTCCCTGAGCACAAGTACGAGATAGTTAAGAGACTCCAGGAAAGGAAACACATTTGTGGGATGACAGGAGATGGTGTGAACGATGCACCTGCACTCAAAAGAGCTGATATTGGGATCGCTGTTGCCGATGCAACTGACGCAGCTCGAAGTGCATCCGACATAGTTCTCACCGAGCCTGGCTTGAGTGTGATCGTGAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAAAGGATGAAGAATTACACCATATATGCTGTTTCTATTACCATCCGAGTGGTGTTAGGGTTTATGCTGCTTGCTCTGATCTGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATTCTGAATGATGGTACCATCATGACCATTTCCAAAGACAGGGTGAAGCCATCTCCAGTGCCAGATTCCTGGAAGTTGAGAGAGATTTTCTTTACCGGCGTTGTTCTCGGTGCCTACCTAGCTATCATGACCGTTGTCTTCTTCTGGGCTGCTTATGCATCTAACTTTTTCTCGGACAAATTCGGAGTGAGATCCATCAGGGAAAGCCACGGCGAGCTCACGGCAGCTGTTTATCTTCAAGTGAGCATTGTAAGTCAAGCACTCATTTTTGTGACACGCTCCAGGAGCTGGTCTTACGTTGAACGCCCTGGTCTGCTTCTTGTCGTTGCTTTTTTTATAGCACAGCTCATAGCCACAATCATAGCTGTGTATGCAAACTGGGAATTTGCAAAGATTAAAGGCATTGGATGTGGTTGGGCTGGTGTGATTTGGCTCTACAGCATCGTTTTCTATATTCCCATGGATATTCTGAAGTTCATCATCCGATATGCATTAACTGGAAAGGCTTGGAACAATATCACTGAGAATAGGGTTGCTTTCAACTCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCACAGTGGGCTGCAGCTCAACGCACATTGCATGGATTGAATCCACCTCAAACTGTTGATGACATTTTGAATGAGAGAAACGACTATAGGGAGCTGTCTGAACTTGCAGAACAGGCCAGGAAACGTGCAGAAGTTTCCAGGCTAAGGGAGGTTCACACTCTAAAGGGTCATGTTGAGTCTGTCGTGAAGCTCAAAGGACTTGACATTGATACGATCCAGCAGAACTACACACTTTGA 2091 0.4648 MIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEDMAGMDVLCSDKTGTLTLNKLTVDKSLIEIFSRDADKDTVILLGARASRVENQDAIDTCIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGKWYRVSKGAPEQIIELCNLREEVKKKALSIIGKFADRGLRSLAVAKQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLREIFFTGVVLGAYLAIMTVVFFWAAYASNFFSDKFGVRSIRESHGELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLVVAFFIAQLIATIIAVYANWEFAKIKGIGCGWAGVIWLYSIVFYIPMDILKFIIRYALTGKAWNNITENRVAFNSKNDYGKGEREAQWAAAQRTLHGLNPPQTVDDILNERNDYRELSELAEQARKRAEVSRLREVHTLKGHVESVVKLKGLDIDTIQQNYTL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10388g00001 696 PRINTS P-type cation-transporting ATPase superfamily signature 355 367 - -
Vium10388g00001 696 PRINTS P-type cation-transporting ATPase superfamily signature 73 87 - -
Vium10388g00001 696 PRINTS P-type cation-transporting ATPase superfamily signature 332 351 - -
Vium10388g00001 696 PRINTS P-type cation-transporting ATPase superfamily signature 227 238 - -
Vium10388g00001 696 PRINTS P-type cation-transporting ATPase superfamily signature 249 259 - -
Vium10388g00001 696 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 590 IPR023298 -
Vium10388g00001 696 PRINTS H+-transporting ATPase (proton pump) signature 504 525 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10388g00001 696 PRINTS H+-transporting ATPase (proton pump) signature 363 388 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10388g00001 696 PRINTS H+-transporting ATPase (proton pump) signature 304 320 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10388g00001 696 PRINTS H+-transporting ATPase (proton pump) signature 332 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10388g00001 696 PRINTS H+-transporting ATPase (proton pump) signature 189 207 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10388g00001 696 SFLD C1.7: P-type atpase like 55 384 - -
Vium10388g00001 696 Coils Coil 640 667 - -
Vium10388g00001 696 Gene3D - 70 369 IPR023214 -
Vium10388g00001 696 FunFam ATPase 4 plasma membrane-type 317 559 - -
Vium10388g00001 696 ProSitePatterns E1-E2 ATPases phosphorylation site. 75 81 IPR018303 -
Vium10388g00001 696 Gene3D - 1 559 - -
Vium10388g00001 696 SUPERFAMILY HAD-like 69 379 IPR036412 -
Vium10388g00001 696 FunFam Plasma membrane ATPase 225 380 - -
Vium10388g00001 696 NCBIfam HAD-IC family P-type ATPase 307 417 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium10388g00001 696 Gene3D - 85 232 IPR023299 GO:0000166
Vium10388g00001 696 FunFam Plasma membrane ATPase 85 232 - -
Vium10388g00001 696 Gene3D - 645 696 - -
Vium10388g00001 696 PANTHER CALCIUM-TRANSPORTING ATPASE 1 627 - -
Vium10388g00001 696 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 550 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium10388g00001 696 Pfam haloacid dehalogenase-like hydrolase 69 346 - -
Vium10388g00001 696 SFLD p-type atpase 55 384 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10388g00001 Vium-Chr10388 7 2178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10388g00001 1 696 Primary Pumps ATPases AT2G07560 81.753 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10388g00001 K01535 - gmx:100782329 1251.5