Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00026 ATGGCACCAGAAGTTTATGAAGAATCCTATAACGAATTAGTTGACATATATTCCTTTGGGATGTGTGTGTTAGAAATGGTTACATTTGAATATCCTTATAGTGAATGTAGTCATCCAGCGCAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGAAGCCTTGTATAAAGTGAAAGATCCAGAAGTGCGAGAATTTGTTGAGAAATGTCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGGCCTGTGGAGAGTGGAGCATTTGATGGCAAGGGTCCTATTATCCATCAGCCATTTTTTAATCTTCACCGAAGCTATAGTAACATGAGTACTGAACACTCAAATTGCTTTGAATATGAAGGAGACTGGATTTCTCATCCGGTTGAGATTGAACCTAATGGAATTGAACTTTTCAAGTGCCGTGATGATGATGAAGCGTCCGAAGAAGATGTTGACATAAGCATCAAGGGAAAGAAGAAAGACGATGGTGGAATTTTCTTGAGATTAAGAATTGCAGACAAAGAAGGACATATTCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCATTAAGTGTAGCAACTGAAATGGTAGCAGAACTCGACATTACTGATCAGGATGTTACCAGCATAGCTGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAACCGGGACCAGGAATTGAAGAACCTAACCCTTTTGTAAACAATTTCTTTTGTCACAATTGTGTGTCTAATGATGCTTCTGGTGGGAGTATTATGGATTTTCATTCACATAATCAAGTTGGAAAGAACTCTCAGCTTCCTCAATGCTGTAGGCATGGTTGTACATCGATGCATGGCCGGTTCGAGGAGATAACATTCCCATCTGAGTATGACAATCATGTCAGAGGGGACACAGTCGCATCTATCGAATCAAACCAACCGGAGAGGCAGCACTATCAGGAGCTATGGAATCATCAAGAAAGTTGTGAACTGAGTTCAGTAGAGTCTGATCAAAGCCATTCTGATGAGCAATATGAACAGCTAGATAAATCAGTATTGGCAGAAGACAAAGGAAAGGGTGTTTTGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACCAAGTTTATCTGGGAATTATTTGTCTACTATCAGTTTGTTATGTCCTGGTTCAGGGAGTGAATATGAGATAGAGGTTCAACAAGAACTGAGATGGCTCAAAGCAAAACTCCAAATGGAGTCAAGGGATCTCAGGGATAAAAGGTTTGGTGCAGCAGCCAAATCTTCTTCACATTCTAGTAACAAAGTCCACAAAACAGAACAAGGCATTGTGCTACCATTGACAGAAACAGTAAACGGAGTGAAAAATGGAATTCACTTGAAACCCCTGTGTAATTTCTGGGATTATGATTCCAGTTACCGTTCTCTAATCCAAAAGAGCCACTCCAATTTGGACATCCAAAGTCTCCAAAATTGTGAGGTGATGTGTTCTCACAAAGAAGGTATTATTATGGCTACTGCCAAGAGTTTTTACACAGGGTCACTTCGAGACACTCCATACAGAACAGTTTCCCTTCCCGTTGATGCTGTGGATATATAA 1659 0.4027 MAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPEALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVESGAFDGKGPIIHQPFFNLHRSYSNMSTEHSNCFEYEGDWISHPVEIEPNGIELFKCRDDDEASEEDVDISIKGKKKDDGGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTSIADMIDGEIASLVPEWKPGPGIEEPNPFVNNFFCHNCVSNDASGGSIMDFHSHNQVGKNSQLPQCCRHGCTSMHGRFEEITFPSEYDNHVRGDTVASIESNQPERQHYQELWNHQESCELSSVESDQSHSDEQYEQLDKSVLAEDKGKGVLENKFAHDPGNPPPSLSGNYLSTISLLCPGSGSEYEIEVQQELRWLKAKLQMESRDLRDKRFGAAAKSSSHSSNKVHKTEQGIVLPLTETVNGVKNGIHLKPLCNFWDYDSSYRSLIQKSHSNLDIQSLQNCEVMCSHKEGIIMATAKSFYTGSLRDTPYRTVSLPVDAVDI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00026 552 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 184 238 IPR024678 GO:0004674|GO:0005524
Vium1037g00026 552 SUPERFAMILY Protein kinase-like (PK-like) 1 90 IPR011009 -
Vium1037g00026 552 Pfam Protein tyrosine and serine/threonine kinase 1 73 IPR001245 GO:0004672|GO:0006468
Vium1037g00026 552 ProSiteProfiles Protein kinase domain profile. 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1037g00026 552 Gene3D Transferase(Phosphotransferase) domain 1 1 94 - -
Vium1037g00026 552 Gene3D - 181 246 - -
Vium1037g00026 552 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00026 Vium-Chr1037 231100 233994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00026 1 442 MAP Kinase Kinase Kinase AT3G04910 53.222 4.97e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium1037g00026 PK_Tyr_Ser-Thr 4.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00026 K08867 - gmx:100790554 858.981