Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00025 ATGAATGAACTCCAAACAGATTCCTCTGCCTCTTCGGAGTTCGTCGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTGTATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAAGTCAAGTTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGGCTTTACTGTGAAATTCATCTTCTCAAAACGCTGAAGCACAAAAACATAATGAAGTTTTACACGTCTTGGGTTGATACTGCTAATAGGAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGGCAGTATAGACAAAAGCACAAAAGAGTTAACATTAGGGCTGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCACTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTGAATGGAAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTGCGCAAGTCTCATGCTGCTCATTGTGTAGGAACGCCTGAATTCATGGCACCAGAAGTTTATGAAGAATCCTATAACGAATTAGTTGACATATATTCCTTTGGGATGTGTGTGTTAGAAATGGTTACATTTGAATATCCTTATAGTGAATGTAGTCATCCAGCGCAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGAAGCCTTGTATAAAGTGAAAGATCCAGAAGTGCGAGAATTTGTTGAGAAATGTCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGGCCTGTGGAGAGTGGAGCATTTGATGGCAAGGGTCCTATTATCCATCAGCCATTTTTTAATCTTCACCGAAGCTATAGTAACATGAGTACTGAACACTCAAATTGCTTTGAATATGAAGGAGACTGGATTTCTCATCCGGTTGAGATTGAACCTAATGGAATTGAACTTTTCAAGTGCCGTGATGATGATGAAGCGTCCGAAGAAGATGTTGACATAAGCATCAAGGGAAAGAAGAAAGACGATGGTGGAATTTTCTTGAGATTAAGAATTGCAGACAAAGAAGGACATATTCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCATTAAGTGTAGCAACTGAAATGGTAGCAGAACTCGACATTACTGATCAGGATGTTACCAGCATAGCTGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAACCGGGACCAGGAATTGAAGAACCTAACCCTTTTGTAAACAATTTCTTTTGTCACAATTGTGTGTCTAATGATGCTTCTGGTGGGAGTATTATGGATTTTCATTCACATAATCAAGTTGGAAAGAACTCTCAGCTTCCTCAATGCTGTAGGCATGGTTGTACATCGATGCATGGCCGGTTCGAGGAGATAACATTCCCATCTGAGTATGACAATCATGTCAGAGGGGACACAGTCGCATCTATCGAATCAAACCAACCGGAGAGGCAGCACTATCAGGAGCTATGGAATCATCAAGAAAGTTGTGAACTGAGTTCAGTAGAGTCTGATCAAAGCCATTCTGATGAGCAATATGAACAGCTAGATAAATCAGTATTGGCAGAAGACAAAGGAAAGGGTGTTTTGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACCAAGTTTATCTGGGAATTATTTGTCTACTATCAGTTTGTTATGTCCTGGTTCAGGGAGTGAATATGAGATAGAGGTTCAACAAGAACTGAGATGGCTCAAAGCAAAACTCCAAATGGAGTCAAGGGATCTCAGGGATAAAAGGTTTGGTGCAGCAGCCAAATCTTCTTCACATTCTAGTAACAAAGTCCACAAAACAGAACAAGGCATTGTGCTACCATTGACAGAAACAGTAAACGGAGTGAAAAATGGAATTCACTTGAAACCCCTGTGTAATTTCTGGGATTATGATTCCAGTTACCGTTCTCTAATCCAAAAGAGCCACTCCAATTTGGACATCCAAAGTCTCCAAAATTGTGAGGTGATGTGTTCTCACAAAGAAGGTATTATTATGGCTACTGCCAAGAGTTTTTACACAGGGTCACTTCGAGACACTCCATACAGAACAGTTTCCCTTCCCGTTGATGCTGTGGATATATAA 2235 0.4076 MNELQTDSSASSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPEALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVESGAFDGKGPIIHQPFFNLHRSYSNMSTEHSNCFEYEGDWISHPVEIEPNGIELFKCRDDDEASEEDVDISIKGKKKDDGGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTSIADMIDGEIASLVPEWKPGPGIEEPNPFVNNFFCHNCVSNDASGGSIMDFHSHNQVGKNSQLPQCCRHGCTSMHGRFEEITFPSEYDNHVRGDTVASIESNQPERQHYQELWNHQESCELSSVESDQSHSDEQYEQLDKSVLAEDKGKGVLENKFAHDPGNPPPSLSGNYLSTISLLCPGSGSEYEIEVQQELRWLKAKLQMESRDLRDKRFGAAAKSSSHSSNKVHKTEQGIVLPLTETVNGVKNGIHLKPLCNFWDYDSSYRSLIQKSHSNLDIQSLQNCEVMCSHKEGIIMATAKSFYTGSLRDTPYRTVSLPVDAVDI 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00025 744 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1037g00025 744 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vium1037g00025 744 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 646 - -
Vium1037g00025 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vium1037g00025 744 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 430 IPR024678 GO:0004674|GO:0005524
Vium1037g00025 744 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vium1037g00025 744 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vium1037g00025 744 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1037g00025 744 CDD STKc_WNK 22 281 - -
Vium1037g00025 744 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1037g00025 744 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vium1037g00025 744 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vium1037g00025 744 Gene3D - 373 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00025 Vium-Chr1037 231100 234553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00025 1 502 MAP Kinase Kinase Kinase AT3G22420 56.727 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium1037g00025 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00025 K08867 - gmx:100790554 1243.02