Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00022 ATGGCATCTCAACAACACGATGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGAGGACGACGTTTTGGCCGCAGATGATGAAGAAAACGAGCCCTCTCCCTCCACCGCTCTCGCCGTCACCGTCGCCGTCCCCGGTTCCGCCATCTCAAACGGCGGAGGCGCTCCACTATCCACGCCCACCGCCACCACCATCGTCATCGGTGACTCCTCCGATCCGAAGCGGCGGCGCCTGGAGCCAATCGAGGAAAAGAAGCCTCCGCCTCCGCTAGACGACTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAACTGCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAATAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCCACCTTCGAAATCTCCCGCAAGATCTGGAGCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCCCCAACCCTAACCCTATCATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACTTCCAGGAATTCTGCGGAGAAGAAAACACCGAAACGCCCCCGGCCTCGATCGGCGGTGAAAGTCGAGCCAATCGATGGATCCGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACAACTACGGCCACTCCTACTGCTACCGCTACCAACACTACCGCTACTACTAATAATAACAATTATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGAGAGTTGGTAGGAGCGATGGGAGGGGGAGCGTTTGGTGGGAGAGGAGTTTCCTTGAATTTAAACCCCACGCCTTTTATGAATTTGAGTTATGGTGGTGGAGAATTGGTGGATGAAAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCGATGGAGGAGTTGCGGTCCGGTGGAGGAGGAGTTTGA 1224 0.5351 MASQQHDAVFREEDMDDDDDESQEDEEFEEEDDVLAADDEENEPSPSTALAVTVAVPGSAISNGGGAPLSTPTATTIVIGDSSDPKRRRLEPIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSSVAPIGENSLDDDEINPCPNPNPIIPHPNLNFSPVILKNETTSRNSAEKKTPKRPRPRSAVKVEPIDGSASNRDLNCTSNATTTATPTATATNTTATTNNNNYNSGYSNNIPSLIEETVRSCLSPVVRELVGAMGGGAFGGRGVSLNLNPTPFMNLSYGGGELVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSGGGGV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00022 407 MobiDBLite consensus disorder prediction 12 40 - -
Vium1037g00022 407 MobiDBLite consensus disorder prediction 82 105 - -
Vium1037g00022 407 Coils Coil 379 399 - -
Vium1037g00022 407 MobiDBLite consensus disorder prediction 244 264 - -
Vium1037g00022 407 PANTHER BNAANNG10740D PROTEIN-RELATED 4 399 IPR007592 GO:0006355
Vium1037g00022 407 MobiDBLite consensus disorder prediction 246 264 - -
Vium1037g00022 407 MobiDBLite consensus disorder prediction 64 80 - -
Vium1037g00022 407 Coils Coil 157 177 - -
Vium1037g00022 407 MobiDBLite consensus disorder prediction 1 105 - -
Vium1037g00022 407 Pfam Protein of unknown function, DUF573 109 203 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00022 Vium-Chr1037 208154 210048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00022 47 402 GeBP Transcription Factor Family AT5G28040 45.974 8.31e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vium1037g00022 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00022 - - gmx:100779712 567.385