Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00015 ATGGCCTCAGCTTCTTCTTCTCCAAAGTTTACAGTGCGAAGGTGCCAACCCCAGTTGGTAGTTCCTGCTGTCCCCACTCCTCACGAAGTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTGCGTTTCCACGTTCCCTTCATACAAATTTATCCAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCGCAAACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTTAGGGAGGGGCCTCACCGCAAATTGATGGTGGATTGCACCGGAGAAGGTGCCATGTTCGTTGAGGCCGATGCTGACGTCACACTCGAGCAGTTCGGGGATTCTCTCCAGCCTCCATTCCCATGCTTCCATGATCTGCTATACCATGTTCCTGCCTCACAGCAAATTACCAACACTCCCCTTCTACTCGTACAGGTGACACGCCTTAGATGCGGTGGTTTCATCTTGGCCTTCTGCTTCAACCACATCATGTGTGACGGAGCTGGTCTTTCACAATTCATGAGCACGTGGGTTGAAATGGCTCGTGGTGCGACAAAACCTTCCATTCCACCAGTTTGGCGAAGGGAGCTTCTAATGGCAAGACATCCACCTCGCATCACATGCAACCATCGCGAGTACGAACATGTCCCAGACACAGTCAAAGGAACCCACGCATCAAACGATCATGACATGGTTCTTCGGTCGTTCTTCTTTGGACCTTCCCAAATTGCTGCTATTCGTGGCTTGGTTCCGCCCCACCTTCAGCACTGCACAACGTTTGATCTCATCACAGCATGTATCTGGCGCTGTCGTACAAAAGCATTGCAGATAAAGGCAGACGAGGATGTTCGCATGATGGTGATAGTGAATGGACGCGGAAGATTGAATCCTCCTTTACCAGTTGGCTACTACGGCAATGCTATTGCATACCCTGCAGCAGTTACGACTGCAGGGAAGCTTTGTGAAAATCCGGTAGGGTACGCAGTGGAGTTAATAAAGAAATTGAAAGGTGAGGTGACAGAAGAGTACATGCATTCGGTGGCAGATTTGATGGTGATTAAAGATCGGTGCATGATTACAACTGTAAGGTCTTGTATCATTTCAGATTTGACACGTTTGAAGCTTAGAGAAGCGGATTTTGGGTGGGGTGAGGCTGTGTACGGTGGAGTGGCTGAAGGTGGAGCTGGGAGCTTTGTTGAAGCAACGTATCAGGTTTTGCATAGGAATGCAAAAGGAGAAGAAGGCATCGTCTTACCAATTTGGTTGCCTGCTAAAGCTATGGATAGGTTTGCGAAAGAGTTGGATGCCATGTTTGGCAACCAAAACCAATCTAATACCGGTAGTCCTAGTTTAAGAATGTCTACCTTATAG 1383 0.483 MASASSSPKFTVRRCQPQLVVPAVPTPHEVKPLSDIDDQEALRFHVPFIQIYPKQASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGPHRKLMVDCTGEGAMFVEADADVTLEQFGDSLQPPFPCFHDLLYHVPASQQITNTPLLLVQVTRLRCGGFILAFCFNHIMCDGAGLSQFMSTWVEMARGATKPSIPPVWRRELLMARHPPRITCNHREYEHVPDTVKGTHASNDHDMVLRSFFFGPSQIAAIRGLVPPHLQHCTTFDLITACIWRCRTKALQIKADEDVRMMVIVNGRGRLNPPLPVGYYGNAIAYPAAVTTAGKLCENPVGYAVELIKKLKGEVTEEYMHSVADLMVIKDRCMITTVRSCIISDLTRLKLREADFGWGEAVYGGVAEGGAGSFVEATYQVLHRNAKGEEGIVLPIWLPAKAMDRFAKELDAMFGNQNQSNTGSPSLRMSTL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00015 460 Gene3D - 6 219 IPR023213 -
Vium1037g00015 460 SUPERFAMILY CoA-dependent acyltransferases 123 189 - -
Vium1037g00015 460 Gene3D - 232 442 IPR023213 -
Vium1037g00015 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 18 439 - -
Vium1037g00015 460 SUPERFAMILY CoA-dependent acyltransferases 233 357 - -
Vium1037g00015 460 Pfam Transferase family 15 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00015 Vium-Chr1037 154782 156481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00015 19 393 Monolignol Biosynthesis Gene Families AT5G48930 31.008 3.56e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00015 K19861 - gmx:100792864 659.448