Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00013 ATGGATTCATCATCTTCCTGTCCACCGTTTACTATGCATAAATGCAAACCTGAGCTAGTGGCTCCTTCAATACCGACTCCCGACGAAACTAAACTATTATCTGAAATAGATGATCAAAACTACCTTCGTTTGCATTATTCAATAATACAAATCTATCAAAATGAATCATCTATGGCGAATAAAGACCCGGTAAGAGTGATTCGGCAGGCACTGGCACAAGCACTGGTTTTCTATTACCCATTTGCAGGTAGGCTTAGGGAGGGTCGTGGCCACAAATTAATGGTGGATTGCACCGGAGAGGGTGTCATGTTTGTTGAGGCTGACGCTGACGTAACACTCGATCAGTTTGGTGACAATCTTCAACCTCCATTCATACACTCTAAGGCATTTATGTGTGATGTTGCAGAATCCGAAGATATTAAAAATTTGCCACTTCTACTCATCCAGGTGACAAGACTCAAGTGTGGTGGTTTCGTGGTGTCGACAGGGTGGAACCACGTGATGGCAGACGGAGCTGGTTTGTCACAGTTCATGCAAGCATGGGCTGAAATGGCTCGAGGTATAAAGACTCCTTCCATTTCACCTCTCTGGAGAAGGGAGCTTCTAATGGCAAGAGATCCACCTCGCATTACATGCAACCATCGTGAATACGACCAAATCCAAGACGACAACCTCAATTCTCTCGACCTGGTTCATCGATCATTCTTCTTCGGACCTGCTCAGATGGCTGCCCTTCGTGGTTTGCTTCCCCGTCAGCTTCGACAGTGCACCGCATTCGATCTCATCACGGCATGCTTCTGGCGTTGTCGCACAAGAGCGCTGCAAATAGACGCAGACGAGGATGTTCGCATGATGTGCATCGTGAACGCGCGTAACAGGTTCCGTCCTTCGTTGCCTGTTGGTTACTACGGCAACGCTTTTGCATACCCCGCCGCAATGACCACCGCGGGAAAGCTCTGCGCAAATCCGTACGCGTATGCGGTGGAGTTGATTCACAAGGTGAAGGGTGAGGTGACAGAGGAGTATATGCATTCGGTGGCGGATCTAATGGTGCTTAAGGGACGGTGCATGCCGACAACGGTAAGGTCTTGTTTGGTGTCAGACCTGACTCGTGCTAGGTTTAGGGACGTTGATTTTGGATGGGGCAAGGCTTTGTCTGGTGCACCAGCCAAAGGTAGCACTGGACCCTTTTACGGAGGAACACACATTGTGTCGTATAAGAATTCGAAAGGAGTAGATGGGTTGGTGTTACCAGTTTGGATGCCCGCAGAAGCCATGTCCATGTTCGTGAAAGACATGGAAGATATGATTAGTGGCAACCAAAACCAGCAGAACCACCCTACAAAAGCTGCTTCTTTTATCAGGTCTACCATGTAG 1377 0.4829 MDSSSSCPPFTMHKCKPELVAPSIPTPDETKLLSEIDDQNYLRLHYSIIQIYQNESSMANKDPVRVIRQALAQALVFYYPFAGRLREGRGHKLMVDCTGEGVMFVEADADVTLDQFGDNLQPPFIHSKAFMCDVAESEDIKNLPLLLIQVTRLKCGGFVVSTGWNHVMADGAGLSQFMQAWAEMARGIKTPSISPLWRRELLMARDPPRITCNHREYDQIQDDNLNSLDLVHRSFFFGPAQMAALRGLLPRQLRQCTAFDLITACFWRCRTRALQIDADEDVRMMCIVNARNRFRPSLPVGYYGNAFAYPAAMTTAGKLCANPYAYAVELIHKVKGEVTEEYMHSVADLMVLKGRCMPTTVRSCLVSDLTRARFRDVDFGWGKALSGAPAKGSTGPFYGGTHIVSYKNSKGVDGLVLPVWMPAEAMSMFVKDMEDMISGNQNQQNHPTKAASFIRSTM 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00013 458 PANTHER ACYL TRANSFERASE 4 10 436 - -
Vium1037g00013 458 Gene3D - 216 432 IPR023213 -
Vium1037g00013 458 Gene3D - 9 215 IPR023213 -
Vium1037g00013 458 Pfam Transferase family 15 436 - -
Vium1037g00013 458 MobiDBLite consensus disorder prediction 439 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00013 Vium-Chr1037 140389 141859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00013 19 431 Monolignol Biosynthesis Gene Families AT5G48930 28.837 5.54e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00013 K19861 - gmx:100792864 604.749