Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00012 ATGGCCTCATCATCATCTTCTTCTTCATCATCTTCTTCTTATCTGAACTTTACAGTGCGAAGGTGCCAACCCCAGCTGGTGCCTCCTGCTATCCCCACTCCTCATGAATTTAAGCCACTTTCCGACATTGATGATCAAGATGGTTTGCGTGTCCAACTTCCCGTGATACACATTTATAAAAAGCAAGCATCAATGGTAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTCTTTTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTAACCGCAAATTGATGGTGGATTGCACTGGAGAAGGTGCCATGTTCATTGAGGCCGACGCAGACGTCACACTTGATCAGTTTGGCGATTTTCTCCAGCCTCCATTCCCATGCTTCCATGAACTGCTATACGATGTCCCTGGCTCACAACAAATTACCAACACTCCCCTTCTACTTGTACAGGTGACACGACTCAAGTGCGGTGGTTTCATCTTAGCCATCGGCCTCAACCACACCATGTGCGATGGACCCGGTTACGAACAATTCATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATTGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAACCATCGTGAATTCGAGCAAGTCCAAGATACCCTTCCTTCTTCAGACCAAAACTTGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAGCACTGCACCACATTTGATCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAAATAGAAGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGCACGTGGTCGGCTCAATCCACCACTTCCTGTTGGTTACTACGGCAACGGTTTTGCATATCCGGCGGCAGTAACGACTGCAGGGAAGCTTTGCAGAAACCCATTTGGGTATGCGGTGGAGTTGATAAATAAAGCGAAAGGTGAGATGACAGAAGAGTACCTGCAATCTGTTGCAGACCTGATGGTGATGAAGGGACGATGCTTATTCACAACTGTGAGGTCTTATATTGTGTCACATTTGGCACGTTTTAACCTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTACTATGGAGTGGCTAAAGCTGGGGTTGGGAGCTTCTTAGGAGTTTCGTTTTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCAATTTGCTTACCTGCTGAAGCTATGGAAAGGTTTGCTGAAGAGTTTAGCCACATGCTAGGCAACAAAAATCAACCTGAAACCAGTTCTGCTCCTTTTATAAAGTCTACCTTCTAA 1392 0.4741 MASSSSSSSSSSSYLNFTVRRCQPQLVPPAIPTPHEFKPLSDIDDQDGLRVQLPVIHIYKKQASMVEKDPVQVIRQALSQTLVFYYPFAGRLREGPNRKLMVDCTGEGAMFIEADADVTLDQFGDFLQPPFPCFHELLYDVPGSQQITNTPLLLVQVTRLKCGGFILAIGLNHTMCDGPGYEQFMSAWAEMARGATKPSIAPVWRRELLMARDPPRITCNHREFEQVQDTLPSSDQNLVQRSFFFGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNARGRLNPPLPVGYYGNGFAYPAAVTTAGKLCRNPFGYAVELINKAKGEMTEEYLQSVADLMVMKGRCLFTTVRSYIVSHLARFNLREVDFGWGEAVYYGVAKAGVGSFLGVSFFCSAKNGKGEEGIIFPICLPAEAMERFAEEFSHMLGNKNQPETSSAPFIKSTF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00012 463 Pfam Transferase family 22 444 - -
Vium1037g00012 463 Gene3D - 222 442 IPR023213 -
Vium1037g00012 463 PANTHER ACYL TRANSFERASE 4 17 444 - -
Vium1037g00012 463 Gene3D - 13 221 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00012 Vium-Chr1037 114389 116396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00012 50 441 Monolignol Biosynthesis Gene Families AT5G48930 30.467 4.86e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00012 K19861 - pvu:PHAVU_006G098400g 741.495