Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1037g00010 ATGGCCTCATCATCATCTTCTTCTTCTCTGAACTTTACAGTGCGAAGGTGCCAACCCCAGCTGGTGCCTCCTGCTATCCCCACTCCTCATGAATTTAAACCACTTTCCGACATTGATGATCAAGAAGCCCTGCGTGTCCACCTTCCGATGATACACATTTATAAAAAGCAAGCATCAATGGTAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTCTTTTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTAACCGCAAATTGATGGTGGATTGCACTGGAGAAGGTGCCATGTTCATTGAGGCCGACGCAGACGTCACACTTGATCAGTTTGGCGATTTTCTCCAGCCTCCATTCCCATGCTTCCATGAACTGCTATACGATGTTCCTGATACACAACAAATTACCAACACTCCCCTCCTACTTGTACAGGTGACACGACTCAAGTGCGGTGGTTTCATCTTAGCCATCGGCTTCAACCACACCATGTGTGATGGACCCGGTTACGAACAATTAATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATCGAACCAGCGTGGCGTAGGGAGCTCCTAATGGCAAGAGTGCCACCTCGCATTACATGCAACCATCGTGAATTCGAGCAAGTCCAAGATACCCTTCCTTCTTCAGACCAAAACTTGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAGCACTGCACCACATTTGATCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAAATAGAAGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGCACGTGGTCGGCTCAATCCACCACTTCCTGTTGGTTACTACGGCAACTGTTTTGCATATCCGGCGGCAGTAACGACTGCAGGGAAGCTTTGCAGAAACCCATTTGGGTATGCGGTGGAGTTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTACAATCTGTTGCAGACCTGATGGTGATGAAAGGACGATGCTTATTCACAACTGTGAGGTCTTATATTGTGTCACATTTAGCACGTTTTAACCTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTACGGTGGAGTGGCCCAAGCTGGGGTTGGGAGCTTCTTAGGAGTTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGCTTACCTGCTGAAGCTATGGAGAGGTTTGCTGAAGAGTTTAACCACATGCTATGCAACAAAAGCCAACCTCAAACCAGTTCTGCTACTTTTATAAAGTCTACCCTCTGA 1377 0.4757 MASSSSSSSLNFTVRRCQPQLVPPAIPTPHEFKPLSDIDDQEALRVHLPMIHIYKKQASMVEKDPVQVIRQALSQTLVFYYPFAGRLREGPNRKLMVDCTGEGAMFIEADADVTLDQFGDFLQPPFPCFHELLYDVPDTQQITNTPLLLVQVTRLKCGGFILAIGFNHTMCDGPGYEQLMSAWAEMARGATKPSIEPAWRRELLMARVPPRITCNHREFEQVQDTLPSSDQNLVQRSFFFGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNARGRLNPPLPVGYYGNCFAYPAAVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVADLMVMKGRCLFTTVRSYIVSHLARFNLREVDFGWGEAVYGGVAQAGVGSFLGVSYFCSAKNGKGEEGIIFPICLPAEAMERFAEEFNHMLCNKSQPQTSSATFIKSTL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1037g00010 458 PANTHER ACYL TRANSFERASE 4 12 439 - -
Vium1037g00010 458 Pfam Transferase family 17 439 - -
Vium1037g00010 458 Gene3D - 8 216 IPR023213 -
Vium1037g00010 458 Gene3D - 217 437 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1037g00010 Vium-Chr1037 100172 102013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1037g00010 45 436 Monolignol Biosynthesis Gene Families AT5G48930 29.730 1.49e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1037g00010 K19861 - pvu:PHAVU_006G098400g 743.036